Gene detail

Detail information of GWHGAAZE011572

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237711.1	8.51082E-36	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	6E-13	F-box protein CPR30
trEMBL	tr\|K4BT34\|K4BT34_SOLLC	2E-35	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g063440.1.1}
TAIR10	AT3G06240.1	3E-12	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	66046264	66047847	-
GWHAAZE00000003	mRNA	66046264	66047847	-
GWHAAZE00000003	exon	66046264	66047847	-
GWHAAZE00000003	CDS	66046264	66047847	-

Transcript Sequence
>GWHTAAZE011584 ATGGCACGCAGAGGCATTGGTGTCGTTAATGATAGTAATATGCCAGAAGATTTGTTGATTAATATTCTGTCGAGGCTACAGGTGAAATCGCTTTTGTGCTTCAAGTGTGTGAGCAAATACTGGTACACACTCATTGAAAGCCCTGATTTTATCAAGAATCATTACCGCAATCTTAATAATCGTGACATGCTCCTTGTTCTTCATTACCTTCACCAACGGTTTATTCTTCTCGATCCCAACCCTGATTGTCTTTCCAATCGGTACATTTGTAAAATGTATGGCTATGATATTGTGAGCGATGACGAACTTTACAATGTCACTAATTCTAATCGCTTCACTCCAATTGCCAATATCAGTAGCAGCGACGATGAATGTAACCTCGACACTACTTCCAATAAAGCAGATAGTACTAGTTCCAATAATTCCGTTAGAACTTATCCAAAATCCTTAAATGAGCTGCATGCGATAAACTCAGATGGGATAAACCCAGACGAAGCTGAGGTTAGCTCTAAGGAATTTGCTTTGGCCATGTTCCACAATGATGATATCTATAGAGGCCAACCCCAGCCCCCTCCATATGAGGATATTATTGATATTACACAAATATTCAGTCGTATTTATTATTGGCACAATGTTATAGGACCAGTTGACGGATTGTTTCTACTCCACAATGGTTATGGGGGTATGCTATATTATAATAAATTGGCTTTATGGAACCCTGCTACAACTGAGTTGAGGCTCCTCCCTTTACCCGATTTCAATTTTCCGCGTCTTGGATCGGGTTATGTATATGCATTTGGATTTGGTGTAGACCATTTGACAAACAGTTACAAGGTAGTCTGGATCCCCGAGAAACAATGGGTCCCTCCACATGAAATGCCTGAACCTCCAAATGTTGCAGTGTATAGCCTTGCCACCAATTCTTGGAGACCTTTTAATGTTGCTTCGCCTCATATGCACAAGATTTGCCATTCTAATTCGACTTACTTAAATGGAGCATGTTATTGGCTGTCTGATCGCGTACTATCAACAAATGGTAAATATATTCGGAATATTAACATTGTTTCATTTGACATGGGCAGTGATGTGTTTCACGACATACGAGTTCCAGATAATGTTGACAATTTAGACATCAGTTCCCATGATATTAAACTTGTGTTGCACAATGATTCTATTGCCCTATTAGCATGTGATTATATTAGTCCACGTGATTATGTAGTGGAATCCATTGAGATTTGGGTTATGAAGCATGAGGAGGGGGGCGGGTGTTGGACCAGACTTTTCACTCTTGGACTTGGGCCACATCTACAACTAGAAAAGCCACTTGGGCTTTGGAAGAACTATAATGAGATTTTCTTCACAACTATAACTCAAAAACTTGTTTTGTACAACAGTGATACTGAGGAAATCACTCACCTCGGAGTCCAATGTGATCCTGACCCACACGGTTACAGGTATTCACTTCCGATTTTCAATTACAAGGAGAGCCTAGTTTCAGTGGGAGGACGAAAGAAGCGCAGCAAGAGGGGGAAATTGCATGCTATGGTTGAACGTTTTGTAGCGTTTCAACCTACTCTACCGTAG

Network for GWHGAAZE011572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	54	1.50E-08
PF07734.14	FBA_1	329	469	7.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.831
	SRR3591706	second leaf	2.170
	SRR3591707	mature leaf	2.978
	SRR3591708	Shoot apex	3.338
	SRR3591709	Stem	3.853
	SRR3591710	White floral bud	5.639
	SRR3591711	White flower	4.728
	SRR3591712	Green floral bud	7.298
	SRR3591713	Yellow flower	4.011
SRP173429	SRR8316895	Juvenile bud stage	5.126
	SRR8316896	Juvenile bud stage	7.607
	SRR8316897	Juvenile bud stage	3.928
	SRR8316894	Third green stage	3.755
	SRR8316900	Third green stage	11.184
	SRR8316901	Third green stage	8.410
	SRR8316898	Complete white stage	1.849
	SRR8316899	Complete white stage	8.458
	SRR8316903	Complete white stage	3.808
	SRR8316902	Silver flowering stage	1.952
	SRR8316904	Silver flowering stage	2.849
	SRR8316905	Silver flowering stage	0.896
	SRR8316906	Gold flowering stage	3.000
	SRR8316907	Gold flowering stage	3.481
	SRR8316908	Gold flowering stage	2.607
SRP132670	SRR6706286	Control	7.523
	SRR6706287	Light intensity 50%	7.683
	SRR6706288	Light intensity 20%	8.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.950
	CNS0095593	Slightly white alabastrum(diploid) 2	5.673
	CNS0095594	Slightly white alabastrum(diploid) 3	5.804
	CNS0095595	Whole white alabastrum(diploid) 2	5.041
	CNS0095596	Whole white alabastrum(diploid) 3	7.038
	CNS0095597	Whole white alabastrum(diploid) 4	6.632
	CNS0095598	Silvery flower (diploied) 1	4.058
	CNS0095599	Silvery flower (diploied) 2	3.230
	CNS0095600	Silvery flower (diploied) 3	4.659
	CNS0095601	Golden flower (diploid) 1	3.262
	CNS0095602	Golden flower (diploid) 2	5.330
	CNS0095603	Golden flower (diploid) 3	5.085
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.624
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.850
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.245
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.837
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.601
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.796
	CNS0095610	Silvery flower (tetraploid) 1	4.266
	CNS0095611	Silvery flower (tetraploid) 2	4.602
	CNS0095612	Silvery flower (tetraploid) 3	4.401
	CNS0095613	Golden flower (tetraploid) 1	1.815
	CNS0095614	Golden flower (tetraploid) 2	3.696
	CNS0095615	Golden flower (tetraploid) 3	1.766
CRA001975	CRR073297	Stem 1	8.145
	CRR073298	Stem 2	5.502
	CRR073299	Stem 3	3.471
	CRR073300	Leaf 1	5.035
	CRR073301	Leaf 2	5.722
	CRR073302	Leaf 3	3.256
	CRR073303	Juvenile bud 1	2.740
	CRR073304	Juvenile bud 2	1.803
	CRR073305	Juvenile bud 3	2.321
	CRR073306	Third green 1	1.432
	CRR073307	Third green 2	0.555
	CRR073308	Third green 3	0.629
	CRR073309	Second white 1	2.771
	CRR073310	Second white 2	1.104
	CRR073311	Second white 3	0.886
	CRR073312	Silver flowering 1	2.023
	CRR073313	Silver flowering 2	0.974
	CRR073314	Silver flowering 3	0.679
	CRR073315	Gold flowering 1	2.036
	CRR073316	Gold flowering 2	4.067
	CRR073317	Gold flowering 3	1.565
	CRR073318	Tawny withering 1	2.832
	CRR073319	Tawny withering 2	2.734
	CRR073320	Tawny withering 3	1.868