Gene detail

Detail information of GWHGAAZE011620

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN80687.1	7.35356E-93	hypothetical protein VITISV_021550 [Vitis vinifera]
Swissprot	tr\|Q9LW60\|P2C44_ARATH	1E-60	Putative protein phosphatase 2C-like protein 44
trEMBL	tr\|A5B1U8\|A5B1U8_VITVI	3E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80687.1}
TAIR10	AT3G23360.1	2E-50	Protein phosphatase 2C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	68994651	68999784	+
GWHAAZE00000003	mRNA	68994651	68999784	+
GWHAAZE00000003	exon	68994651	68994869	+
GWHAAZE00000003	exon	68995297	68995351	+
GWHAAZE00000003	exon	68995748	68995960	+
GWHAAZE00000003	exon	68998252	68998406	+
GWHAAZE00000003	exon	68999647	68999784	+
GWHAAZE00000003	CDS	68994651	68994869	+
GWHAAZE00000003	CDS	68995297	68995351	+
GWHAAZE00000003	CDS	68995748	68995960	+
GWHAAZE00000003	CDS	68998252	68998406	+
GWHAAZE00000003	CDS	68999647	68999784	+

Transcript Sequence
>GWHTAAZE011632 ATGACACCCGTCTCACATGGATATCATGTTGTGGAGGGAAGATTATTATTGGCTGGTGATGAGTCGAGCGATTTGGACACAGACATCGACTCTGTTGTTGTACAACGAGAACAGATTGAAGACTGCGAGCTATGGTTCTTTGGAGTTTTTGACTATAGAATTGGAGATGGAGTTACCAAGTACATGCAATCACATCTCTTTGATAAGAAACCTGAAGTGAACACATTTGGCCCAACCGAAGGGGGTTTGCCTGAGAGTCAGCAAGGTCGCCAAGCAAGAGCAAAGAGCAGGGAAATAGACAAGGCCAAAGTAGGGAGCAAAGGGACTTCCAATAGAGTAGTAGGCTCAGCATCAGCTATTGTTATAAATGGAGAGAAGCTTGTGATAGCTAACATGGGAGACTATAGAGCAGTTGTTTGTAAAGATGGCGATGCTTTTCAGATCAGTAGAACCCGCCATCAAGCCACCAAAGCGACATTGGTCCCAAGTGCTATACATATGCCTAAAGTGCGCATGTTAGCTTGTGACTCCAGCCATGCAGTGGGAACTAAACCCTCTAAAAGCTTAGAACCGATTGTTGGATCTCAGAACATAGACCCTGAAACTGAATTTGTTATCTTAGCAAGTACCGGCATTTGGGAGGTAATGAGGCATCAAGAGGCTGTCAGCCTGATCAGGCATATAGAGGACCCACAGGAAGCAGCTGAGTGTTTAGCCAAGGAAGCTCTAATCAGAATGAGCAGAAGCAATATTTCTTGCTTGGTCATCCGCTTTGACTGA

Network for GWHGAAZE011620

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	46	152	4.60E-09
PF00481.22	PP2C	186	251	1.40E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19704	PTC1	MAPK signaling pathway - yeast	map04011

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.209
	SRR3591706	second leaf	0.612
	SRR3591707	mature leaf	0.213
	SRR3591708	Shoot apex	1.620
	SRR3591709	Stem	1.166
	SRR3591710	White floral bud	3.207
	SRR3591711	White flower	3.181
	SRR3591712	Green floral bud	3.768
	SRR3591713	Yellow flower	5.702
SRP173429	SRR8316895	Juvenile bud stage	2.083
	SRR8316896	Juvenile bud stage	4.112
	SRR8316897	Juvenile bud stage	2.211
	SRR8316894	Third green stage	1.512
	SRR8316900	Third green stage	8.850
	SRR8316901	Third green stage	6.316
	SRR8316898	Complete white stage	2.223
	SRR8316899	Complete white stage	4.303
	SRR8316903	Complete white stage	2.340
	SRR8316902	Silver flowering stage	1.153
	SRR8316904	Silver flowering stage	2.182
	SRR8316905	Silver flowering stage	0.752
	SRR8316906	Gold flowering stage	2.772
	SRR8316907	Gold flowering stage	1.464
	SRR8316908	Gold flowering stage	11.832
SRP132670	SRR6706286	Control	3.457
	SRR6706287	Light intensity 50%	3.700
	SRR6706288	Light intensity 20%	4.186
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.557
	CNS0095593	Slightly white alabastrum(diploid) 2	2.606
	CNS0095594	Slightly white alabastrum(diploid) 3	2.389
	CNS0095595	Whole white alabastrum(diploid) 2	5.473
	CNS0095596	Whole white alabastrum(diploid) 3	7.991
	CNS0095597	Whole white alabastrum(diploid) 4	6.325
	CNS0095598	Silvery flower (diploied) 1	0.802
	CNS0095599	Silvery flower (diploied) 2	1.134
	CNS0095600	Silvery flower (diploied) 3	2.111
	CNS0095601	Golden flower (diploid) 1	0.499
	CNS0095602	Golden flower (diploid) 2	1.874
	CNS0095603	Golden flower (diploid) 3	1.618
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.282
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.715
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.911
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.677
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.141
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.572
	CNS0095610	Silvery flower (tetraploid) 1	5.118
	CNS0095611	Silvery flower (tetraploid) 2	3.967
	CNS0095612	Silvery flower (tetraploid) 3	5.504
	CNS0095613	Golden flower (tetraploid) 1	6.223
	CNS0095614	Golden flower (tetraploid) 2	5.686
	CNS0095615	Golden flower (tetraploid) 3	6.526
CRA001975	CRR073297	Stem 1	1.416
	CRR073298	Stem 2	2.074
	CRR073299	Stem 3	0.856
	CRR073300	Leaf 1	3.913
	CRR073301	Leaf 2	4.265
	CRR073302	Leaf 3	2.474
	CRR073303	Juvenile bud 1	1.228
	CRR073304	Juvenile bud 2	1.123
	CRR073305	Juvenile bud 3	2.704
	CRR073306	Third green 1	0.838
	CRR073307	Third green 2	0.835
	CRR073308	Third green 3	0.391
	CRR073309	Second white 1	0.194
	CRR073310	Second white 2	0.617
	CRR073311	Second white 3	0.014
	CRR073312	Silver flowering 1	0.392
	CRR073313	Silver flowering 2	0.095
	CRR073314	Silver flowering 3	0.148
	CRR073315	Gold flowering 1	0.059
	CRR073316	Gold flowering 2	0.398
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.097
	CRR073319	Tawny withering 2	1.709
	CRR073320	Tawny withering 3	0.774