Gene detail

Detail information of GWHGAAZE011635

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603581.1	0	PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q4FE47\|XB35_ARATH	1E-166	Putative E3 ubiquitin-protein ligase XBAT35
trEMBL	tr\|M1BG25\|M1BG25_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400044358}
TAIR10	AT3G23280.2	3E-136	XB3 ortholog 5 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	69307824	69316941	+
GWHAAZE00000003	mRNA	69307824	69316941	+
GWHAAZE00000003	exon	69307824	69308071	+
GWHAAZE00000003	exon	69309908	69310022	+
GWHAAZE00000003	exon	69310327	69310407	+
GWHAAZE00000003	exon	69310810	69310898	+
GWHAAZE00000003	exon	69311034	69311125	+
GWHAAZE00000003	exon	69311285	69311366	+
GWHAAZE00000003	exon	69312649	69312751	+
GWHAAZE00000003	exon	69314576	69314661	+
GWHAAZE00000003	exon	69316370	69316595	+
GWHAAZE00000003	exon	69316679	69316941	+
GWHAAZE00000003	five_prime_UTR	69307824	69307969	+
GWHAAZE00000003	CDS	69307970	69308071	+
GWHAAZE00000003	CDS	69309908	69310022	+
GWHAAZE00000003	CDS	69310327	69310407	+
GWHAAZE00000003	CDS	69310810	69310898	+
GWHAAZE00000003	CDS	69311034	69311125	+
GWHAAZE00000003	CDS	69311285	69311366	+
GWHAAZE00000003	CDS	69312649	69312751	+
GWHAAZE00000003	CDS	69314576	69314661	+
GWHAAZE00000003	CDS	69316370	69316595	+
GWHAAZE00000003	CDS	69316679	69316941	+

Transcript Sequence
>GWHTAAZE011647 GAAAATCTTTGCACAAAAATTGCAAGTCTTGTCATTTTTGTTTTTCTTTTTCTCTCGGAACTTTCCCGAGAAAATTTTCCCAATTTTCTCGAGGATTGGTCCGATTATTATCCTCCGAGGCCTAGAAAGTGAATTGAATTGCTCAAATGGGGCAACAGCAATCCAAAGGCGAATTGCTGTTTCAGCAAGTTAATTATGGCAACATCGAAGGCATCAAATCTCTTCGCAACGAAGGTGCAAGTCTCGAGTGGGTTGATAGGGAGGCCAAGACTCCCCTAATTGCCGCTTGCATGAATCCCCAACTTTACAATGTTGCAAAAGCTTTGATTGAACTGGGTGCTGATGTGAATGCTTATCGTCCCGGTCGGCATGCTGGGACTCCTCTACATCATGCTGCAAAAAGAGGCCTCGACCAGACTGTTAAGCTACTTCTTTTAAATGGAGCAAATGCATTAGTCATGAACGATGACTGTCAAACTCCACTTGATGTGGCTAGAACTAAAGGGTTCGCCAATGTTGCCCGTGCAATTGAGAGCCATCTCTGCCTATTTTCTGGTTGGCTGCGAGAGCTTTATGGGCCAGGTTTTCTTGAACTACTTGCTCCTCAACTGCTTTCAAGAAAAGTTTGGGTGGTTGTTTTACCATGTGGTTCTCATAATTTTCGAAAGCCTTTCAAGCTGTTGCTTGCTATATATGCTAGTCCACAGGATGCCCGACCTCGAACAATTATTGCACTGTGGAAGGCCACTATGGAGGAACCAAACTTTAACCAGCATGATCCTACAGTGATCATTTCTGACATTTCCACCAAATCACGCATTAAACTTGCAGCTGATAATGAAAGCGACATGCAACAATTGCAGTCGTTTTGCAATGCATGCAAAGGAATTCCTCAGGTTGTGCATCCAACATTTCCGTACATCAACCATGGCCCTCCTCTTACAACAACTGCCCCACCAACCTCTGAGGACGTAGAATTAGCAATGGCAATCAACGCCTCCCTTCAGTCTCTTACACATGAGAGACCACCGGTTCTTGATGCTCACCCAAGCACTGGATCCAACCCCTCCACCAGTCGGACCAACACTACTCCTGCTCCTGCACCTCATAAAGAGGAAGCCGATGACGGTCCAATTCAGTACCCATCAATTGATTCTGGCCCTATTGATATATCTGCTAGAGCTGAACAAAAGAAAGAAGACGGTGGTAGTGGTGGTTCTTCGTCGTGTGTGATATGTTTGGACGCGCCAGTTCAGGGGGCGTGCATACCATGTGGGCACATGGCTGGGTGCATGTCTTGTTTGAATGAGATCAAAGCCAAGAAGTGGGGCTGCCCAGTTTGTCGTGCTAAAATCAATCAAGTGATTCGGCTTTATGCTGTTTAG

Network for GWHGAAZE011635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13857.7	Ank_5	60	116	2.70E-07
PF13920.7	zf-C3HC4_3	359	406	5.00E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.809
	SRR3591706	second leaf	3.787
	SRR3591707	mature leaf	7.077
	SRR3591708	Shoot apex	3.507
	SRR3591709	Stem	10.437
	SRR3591710	White floral bud	58.351
	SRR3591711	White flower	12.857
	SRR3591712	Green floral bud	33.422
	SRR3591713	Yellow flower	10.336
SRP173429	SRR8316895	Juvenile bud stage	4.067
	SRR8316896	Juvenile bud stage	6.421
	SRR8316897	Juvenile bud stage	3.304
	SRR8316894	Third green stage	2.225
	SRR8316900	Third green stage	16.791
	SRR8316901	Third green stage	15.829
	SRR8316898	Complete white stage	3.998
	SRR8316899	Complete white stage	9.108
	SRR8316903	Complete white stage	6.681
	SRR8316902	Silver flowering stage	13.932
	SRR8316904	Silver flowering stage	10.347
	SRR8316905	Silver flowering stage	3.917
	SRR8316906	Gold flowering stage	15.397
	SRR8316907	Gold flowering stage	18.211
	SRR8316908	Gold flowering stage	13.949
SRP132670	SRR6706286	Control	19.665
	SRR6706287	Light intensity 50%	21.690
	SRR6706288	Light intensity 20%	19.526
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.583
	CNS0095593	Slightly white alabastrum(diploid) 2	11.413
	CNS0095594	Slightly white alabastrum(diploid) 3	13.009
	CNS0095595	Whole white alabastrum(diploid) 2	35.768
	CNS0095596	Whole white alabastrum(diploid) 3	37.781
	CNS0095597	Whole white alabastrum(diploid) 4	46.866
	CNS0095598	Silvery flower (diploied) 1	5.633
	CNS0095599	Silvery flower (diploied) 2	8.072
	CNS0095600	Silvery flower (diploied) 3	14.175
	CNS0095601	Golden flower (diploid) 1	6.638
	CNS0095602	Golden flower (diploid) 2	13.510
	CNS0095603	Golden flower (diploid) 3	13.981
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.173
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.522
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.923
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.232
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.542
	CNS0095610	Silvery flower (tetraploid) 1	10.076
	CNS0095611	Silvery flower (tetraploid) 2	17.269
	CNS0095612	Silvery flower (tetraploid) 3	17.182
	CNS0095613	Golden flower (tetraploid) 1	6.486
	CNS0095614	Golden flower (tetraploid) 2	8.516
	CNS0095615	Golden flower (tetraploid) 3	19.242
CRA001975	CRR073297	Stem 1	8.708
	CRR073298	Stem 2	11.208
	CRR073299	Stem 3	11.555
	CRR073300	Leaf 1	27.872
	CRR073301	Leaf 2	20.278
	CRR073302	Leaf 3	13.610
	CRR073303	Juvenile bud 1	30.435
	CRR073304	Juvenile bud 2	22.229
	CRR073305	Juvenile bud 3	16.026
	CRR073306	Third green 1	17.202
	CRR073307	Third green 2	18.479
	CRR073308	Third green 3	18.256
	CRR073309	Second white 1	7.706
	CRR073310	Second white 2	8.845
	CRR073311	Second white 3	12.462
	CRR073312	Silver flowering 1	17.113
	CRR073313	Silver flowering 2	18.482
	CRR073314	Silver flowering 3	12.441
	CRR073315	Gold flowering 1	13.906
	CRR073316	Gold flowering 2	8.490
	CRR073317	Gold flowering 3	8.756
	CRR073318	Tawny withering 1	31.429
	CRR073319	Tawny withering 2	18.421
	CRR073320	Tawny withering 3	34.612