Gene detail

Detail information of GWHGAAZE011653

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009623394.1	PREDICTED: cryptochrome-1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q56ZL8\|CRY2_ARATH	Cryptochrome-2
trEMBL	tr\|Q309E7\|Q309E7_NICSY	Cryptochrome 2 {ECO:0000313\|EMBL:ABB36797.1}
TAIR10	AT1G04400.2	cryptochrome 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	69582794	69587502	+
GWHAAZE00000003	mRNA	69582794	69587502	+
GWHAAZE00000003	exon	69582794	69583106	+
GWHAAZE00000003	exon	69584443	69584664	+
GWHAAZE00000003	exon	69585094	69585800	+
GWHAAZE00000003	exon	69586834	69587502	+
GWHAAZE00000003	CDS	69582794	69583106	+
GWHAAZE00000003	CDS	69584443	69584664	+
GWHAAZE00000003	CDS	69585094	69585800	+
GWHAAZE00000003	CDS	69586834	69587502	+

Transcript Sequence
>GWHTAAZE011665 ATGGGTAGCAATAGTAAGACAATTGTGTGGTTTAGGAGGGATCTGAGGATTGAGGACAATCCAGCCTTAGCAGCAGCAGCAAGGGAGGGCTCAGTGCTCCCTGTGTATATTTGGTGCCCTAAAGAAGAAAAGCAATACTACCCGGGCCGGGTTTCGAGGTGGTGGCTAAAACAATCTCTTATTCATTTGGCAAAATCCTTGAATTCTCTTGGGGCTTCACTTGTATTGATCAAAGCTCAGAGTACCCTTTCTGCTCTTTTGGATTGCATCACTACTATTGGTGCAACCAAAGTAGTTTATAATCATCTTTATGATCCGGTTTCGCTTAGTCGTGATCACACCATTAAAAAAAAGCTTGGGGAGCTTGGCATCTCTGTGCAAAGCTATAATGGGGATTTGTTGTATGAACCATGGGACGTATATAATGAGGAAGGACACGCTTTTACGACCTTTGATGCGTATTGGGAGAAGTGCTTGAACATGGATAAAGAACCGCTTTCACATACTCCTCCATGGCAATTGATACCCGCTTCAGGGGAAATTGAAAACTGTCCGATAGAAAACCTGGGTCTCGAAGATGAATCCGAAAAATCAAGCAATGCCTTATTAGGAAGAGGATGGTCACCCGGTTGGAGTAATGCTGATAAGGCTCTCACTTCATTTTTGGAATACCATTTACTCGACTACTCAAAAGATAGGCTAAAAGTAGCAGGAAACTCCACGTCTCTCCTCTCTCCTTATCTTCATTTCGGCGAATTAAGTGTGAGAAAAATTTTCCACTCTGTTCGAGTTAAACAAATTCTTTGGGCAAGAGAAGAAAACTCCGTTGGGAAAGAGAGCGTAAATCTTTTCCTTAGAGCTCTCGGTTTTAGAGAATACTCTCGTTACATTTGCTTTAACTTTCCATTTACACACGAAAGACCGCTGATGAGCAATTTGAAGTTTTTCCCTTGGAATGCTGACACTGCGCTCTTTAAGGCATGGAGACAAGGTCGGACTGGTTACCCGTTGGTTGATGCGGGAATGAGGGAGCTTTGGGCTACAGGGTGGACCCACAATAGGATAAGGGTGATTGCTGCAAGTTTCTTTGTGAAATTTCTTCTTCTTCCTTGGCAATGGGGGATGAAGTACTTTTGGGACACGCTTTTAGATGCAGATTTGGAATGCGATATCCTTGGTTGGCAGTATATCTCAGGGAGCTTGCCTGATGGACATGAGCTCGAGCGTCTAGATAGCCCCCAGGTTCAAGGATTCAACTTTGATCCGCAAGGAGACTACGTAAGGCAATGGCTCCCGGAGCTAGCAAGAATGCCAGTTGAGTGGGTCCACCATCCATGGGACGCACCGCTATCTGTACTCAAAGCCGCAGGTCTAGAGTTGGGACTAAACTACCCGAAGCCCATCATCGACCTTGATGTGGCAAGAGACCGTTTAACCGAAGCCATATTCATCATGCGAGGAAGAGAAGCATCTTCAAGGGCCGAGGATTCAGGCACAACCACCGAGGTTGTTTTCGACAACTCAGACAGTATCAACAATATGGGGATTCCAAGGGTCATTTTGAGGGAAAATGTTGGGTGCCCGAGTAGTTCATCCCGGGATCAAAGGGTGCCCTCCATGCAAAATTGTAAGGAGAGTTTTCCCAATAGGAAGAGGTTGTTAAATTGCGTCGAAGAGAAAACAGTGGTTAAAGGTAATTTAAGGGATCGTGAGAAAATGGACGATGATGACTTGTGCTCTACAGCTGTGTCTTCTTCAGCTAAGAAGCAGAATATTTGTACCAGCAGCAGTAGCAACTCTTTCTCTGTTCCAAGGTTTGGTTGTTCATCTTTGAATGGGGAGCCATATGAGCAGCAGCAATTGCAGGAAGAGAGTGAAGTGGAACTTAACTCAAGGAAACAAGGTACGTGA

Network for GWHGAAZE011653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00875.19	DNA_photolyase	8	166	6.10E-39
PF03441.15	FAD_binding_7	284	481	2.70E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12119	CRY2	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0009785	biological_process	blue light signaling pathway
GO:0009882	molecular_function	blue light photoreceptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.034
	SRR3591706	second leaf	15.429
	SRR3591707	mature leaf	24.822
	SRR3591708	Shoot apex	21.506
	SRR3591709	Stem	29.050
	SRR3591710	White floral bud	85.217
	SRR3591711	White flower	114.864
	SRR3591712	Green floral bud	56.811
	SRR3591713	Yellow flower	90.162
SRP173429	SRR8316895	Juvenile bud stage	12.590
	SRR8316896	Juvenile bud stage	22.865
	SRR8316897	Juvenile bud stage	9.395
	SRR8316894	Third green stage	14.111
	SRR8316900	Third green stage	42.176
	SRR8316901	Third green stage	35.747
	SRR8316898	Complete white stage	30.624
	SRR8316899	Complete white stage	68.382
	SRR8316903	Complete white stage	56.628
	SRR8316902	Silver flowering stage	39.952
	SRR8316904	Silver flowering stage	60.029
	SRR8316905	Silver flowering stage	25.597
	SRR8316906	Gold flowering stage	98.725
	SRR8316907	Gold flowering stage	101.904
	SRR8316908	Gold flowering stage	89.735
SRP132670	SRR6706286	Control	36.776
	SRR6706287	Light intensity 50%	34.368
	SRR6706288	Light intensity 20%	38.976
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.914
	CNS0095593	Slightly white alabastrum(diploid) 2	15.260
	CNS0095594	Slightly white alabastrum(diploid) 3	11.309
	CNS0095595	Whole white alabastrum(diploid) 2	17.771
	CNS0095596	Whole white alabastrum(diploid) 3	20.220
	CNS0095597	Whole white alabastrum(diploid) 4	18.364
	CNS0095598	Silvery flower (diploied) 1	70.624
	CNS0095599	Silvery flower (diploied) 2	52.655
	CNS0095600	Silvery flower (diploied) 3	113.554
	CNS0095601	Golden flower (diploid) 1	54.527
	CNS0095602	Golden flower (diploid) 2	136.205
	CNS0095603	Golden flower (diploid) 3	132.376
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.988
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.984
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.320
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.315
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.010
	CNS0095610	Silvery flower (tetraploid) 1	91.808
	CNS0095611	Silvery flower (tetraploid) 2	131.399
	CNS0095612	Silvery flower (tetraploid) 3	125.230
	CNS0095613	Golden flower (tetraploid) 1	60.559
	CNS0095614	Golden flower (tetraploid) 2	75.722
	CNS0095615	Golden flower (tetraploid) 3	69.822
CRA001975	CRR073297	Stem 1	28.841
	CRR073298	Stem 2	27.117
	CRR073299	Stem 3	24.335
	CRR073300	Leaf 1	32.037
	CRR073301	Leaf 2	30.580
	CRR073302	Leaf 3	28.685
	CRR073303	Juvenile bud 1	27.998
	CRR073304	Juvenile bud 2	27.623
	CRR073305	Juvenile bud 3	36.037
	CRR073306	Third green 1	18.146
	CRR073307	Third green 2	12.943
	CRR073308	Third green 3	17.764
	CRR073309	Second white 1	26.893
	CRR073310	Second white 2	30.321
	CRR073311	Second white 3	28.432
	CRR073312	Silver flowering 1	17.105
	CRR073313	Silver flowering 2	13.987
	CRR073314	Silver flowering 3	14.303
	CRR073315	Gold flowering 1	18.819
	CRR073316	Gold flowering 2	31.644
	CRR073317	Gold flowering 3	25.969
	CRR073318	Tawny withering 1	31.961
	CRR073319	Tawny withering 2	22.601
	CRR073320	Tawny withering 3	23.929