Gene detail

Detail information of GWHGAAZE011677

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097709.1	0	PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q3ECP0\|TFB1A_ARATH	0	Probable RNA polymerase II transcription factor B subunit 1-1
trEMBL	tr\|D7UAQ6\|D7UAQ6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39821.3}
TAIR10	AT1G55750.1	5E-150	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71153370	71170973	-
GWHAAZE00000003	mRNA	71153370	71170973	-
GWHAAZE00000003	exon	71170893	71170973	-
GWHAAZE00000003	exon	71170320	71170398	-
GWHAAZE00000003	exon	71169760	71169821	-
GWHAAZE00000003	exon	71169237	71169300	-
GWHAAZE00000003	exon	71168842	71168968	-
GWHAAZE00000003	exon	71168058	71168133	-
GWHAAZE00000003	exon	71167497	71167592	-
GWHAAZE00000003	exon	71167230	71167274	-
GWHAAZE00000003	exon	71166622	71166678	-
GWHAAZE00000003	exon	71165592	71165747	-
GWHAAZE00000003	exon	71165382	71165447	-
GWHAAZE00000003	exon	71164402	71164525	-
GWHAAZE00000003	exon	71164189	71164245	-
GWHAAZE00000003	exon	71163944	71164071	-
GWHAAZE00000003	exon	71163599	71163790	-
GWHAAZE00000003	exon	71163455	71163492	-
GWHAAZE00000003	exon	71163144	71163312	-
GWHAAZE00000003	exon	71161848	71161895	-
GWHAAZE00000003	exon	71154005	71154073	-
GWHAAZE00000003	exon	71153370	71153546	-
GWHAAZE00000003	CDS	71170893	71170973	-
GWHAAZE00000003	CDS	71170320	71170398	-
GWHAAZE00000003	CDS	71169760	71169821	-
GWHAAZE00000003	CDS	71169237	71169300	-
GWHAAZE00000003	CDS	71168842	71168968	-
GWHAAZE00000003	CDS	71168058	71168133	-
GWHAAZE00000003	CDS	71167497	71167592	-
GWHAAZE00000003	CDS	71167230	71167274	-
GWHAAZE00000003	CDS	71166622	71166678	-
GWHAAZE00000003	CDS	71165592	71165747	-
GWHAAZE00000003	CDS	71165382	71165447	-
GWHAAZE00000003	CDS	71164402	71164525	-
GWHAAZE00000003	CDS	71164189	71164245	-
GWHAAZE00000003	CDS	71163944	71164071	-
GWHAAZE00000003	CDS	71163599	71163790	-
GWHAAZE00000003	CDS	71163455	71163492	-
GWHAAZE00000003	CDS	71163291	71163312	-
GWHAAZE00000003	three_prime_UTR	71163144	71163290	-
GWHAAZE00000003	three_prime_UTR	71161848	71161895	-
GWHAAZE00000003	three_prime_UTR	71154005	71154073	-
GWHAAZE00000003	three_prime_UTR	71153370	71153546	-

Transcript Sequence
>GWHTAAZE011689 ATGACGGATGGGCAGGTCACTAAGCGTGCCAAGTTTAAGTCTTCAGTTAAGGACCCTGGTGTTTCTGGCGTCTTGAAAATGAGCCGGGAGAAATTTGTGTTTATGCCTAATGATCCAAAATCATCAGCAAGGCTTAACGTAGGGTTTAAATTGATCAAAGGTCACAAATTCACCAAGGAGGGTTCTAGTAAACAAGCTCTACTTAACCTTACCCAGGATCAGGGTGGAAGTTATATCTTTGAGTTTGAATGTTTTTCGGATCGTGATGTCTGCCGAGAGTTTGTTGCCGCAGTGCTCGCAAATTCTGGAGACACTGGTAAAGCAAGTTCAGAAAGATCAGCTATTCCACATCACAATGAACAACTTAGCACAGCAGAGATGGAACGTCGGATTAAGCTCTTACAGGAGGATAGCGAGTTGCAGAAACTTCATAAGCAATTTGTGATTGGAGGTGTGCTGACAGAGGCTGAATTTTGGGCAACAAGGAAGAAGTTGCTGAACAATAAAGCAGACAGAAAGACAAAACAACGTGTGGGGTTAAAAAGTGATATGATTTTCAATGTCAGACCATCATCGGATGGTCAGTCGAACAAAGTTACATTCAACTTGACACCAGAAATTATTCACCAGATTTTTGCTGAAAAACCTGCTGTTCGCCAGGCATATCTGACTTTTGTTCCTCGGAAGATGACAGAAAAGGACTTCTGGACCAAATATTGGAGAGCGGAATATCTACACAGCACAAAAAATATTGGCGCAGCTGCAGCAGAAGCTGCTGAAGATGAGGAGCTTGCTGTTTTCTTGATGAAAGACGAGATATTGGCTAGTGAAGCTCGGCGGAAGATCAGACGGGTTGATCCAACATTGGACATGGAAGCTGATGAAGGGGATGATTATACGCATCTTCCGGACCACGGGCTAACTCATGATGTTACCACGGATGTGATTGAGGCACAATATGAGCCATACAGGTGGTCTTTTTTGCAAGACCTCAACCGGCATGCGGCAGTTGTTCTTGAAGGAAGAGCTATAGATGTGGAGTTGGGAGATACAAGGGCTGTTGCTGAAGCACTTACCAGGTCAAAAAAAGTCGAGTTAGCTAATGAAGCCTCTGGTTGCATTGTGGATCAAAAGCAATTAGATAGGCTTTCTCGGATGGCTGAGATTGAGGATCTTCAGGGACCTCGTGGCCCTCCAGTTGCACCACTTTATATTAAGGATCCTCGTGAGTACTTCGATTCTCAACAAGCTAATGCATTAAAAACTCTGGGAGATACACAAGCTGGAACAAGACAAATGAAACGTAGCATGAGCACACGTGAAGTGTATGGTTCTTTAGCAAAGTTGATCTCTGAAATTAAAACCGTAGGATTGAGTGATCCCGTAATTAAACCTGAAATTGCTCTCCAGGTTCTCAGTGGATTGACCCAAAATATATCAAGCACTAGACTGAAAGATGTTATTCTATGACCTATTTACTGTCTCAGTTCTTAACATATTTTTTTGAGATTTTATCTAAGAACAATTTTTTTTTTCCAGCATTGGACGTCTATTCAGGAGTTACTGCAGCATTTCTGGTCATCATATCCCATTACAACTACGTATCTTCATACTAAGGCAAGCAAATTGAAGGATGCCATGTCACAAATTTACCCGAAGCTACAGGAGATTAAGGAATCGGTGCCGTCAAATTTCCGGCATCAAGTTTCGCTTCTTGTTCAACCAATGCTTCAGGCTCTAGATGCTGCTTTTGCACATTATGATGCTGATTTACAGAAGAGATCAACTAAGAGTGGACAGAGACCCAATGGATTTGCCTAAAGAAGACCAATTTACGTTACCCACGTTTTTTTTTCGCTCATTTTGGTCATTATAGGATTACATTACGTCTAACAAAATTTTGCACACAGC

Network for GWHGAAZE011677

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0110

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03909.18	BSD	197	249	7.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	BSD

KEGG pathway

KO	Enzyme	pathway	mapID
K03141	TFIIH1, GTF2H1, TFB1	Basal transcription factors	map03022
K03141	TFIIH1, GTF2H1, TFB1	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.064
	SRR3591706	second leaf	1.584
	SRR3591707	mature leaf	1.495
	SRR3591708	Shoot apex	2.757
	SRR3591709	Stem	2.301
	SRR3591710	White floral bud	2.219
	SRR3591711	White flower	2.235
	SRR3591712	Green floral bud	2.830
	SRR3591713	Yellow flower	1.016
SRP173429	SRR8316895	Juvenile bud stage	5.001
	SRR8316896	Juvenile bud stage	7.773
	SRR8316897	Juvenile bud stage	1.433
	SRR8316894	Third green stage	3.100
	SRR8316900	Third green stage	8.043
	SRR8316901	Third green stage	7.512
	SRR8316898	Complete white stage	2.339
	SRR8316899	Complete white stage	5.975
	SRR8316903	Complete white stage	4.346
	SRR8316902	Silver flowering stage	1.655
	SRR8316904	Silver flowering stage	2.487
	SRR8316905	Silver flowering stage	1.185
	SRR8316906	Gold flowering stage	3.321
	SRR8316907	Gold flowering stage	2.493
	SRR8316908	Gold flowering stage	2.210
SRP132670	SRR6706286	Control	5.128
	SRR6706287	Light intensity 50%	6.025
	SRR6706288	Light intensity 20%	6.490
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.787
	CNS0095593	Slightly white alabastrum(diploid) 2	4.629
	CNS0095594	Slightly white alabastrum(diploid) 3	6.198
	CNS0095595	Whole white alabastrum(diploid) 2	4.651
	CNS0095596	Whole white alabastrum(diploid) 3	5.637
	CNS0095597	Whole white alabastrum(diploid) 4	3.802
	CNS0095598	Silvery flower (diploied) 1	3.467
	CNS0095599	Silvery flower (diploied) 2	2.456
	CNS0095600	Silvery flower (diploied) 3	3.405
	CNS0095601	Golden flower (diploid) 1	2.053
	CNS0095602	Golden flower (diploid) 2	2.897
	CNS0095603	Golden flower (diploid) 3	3.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.416
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.673
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.030
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.878
	CNS0095610	Silvery flower (tetraploid) 1	1.139
	CNS0095611	Silvery flower (tetraploid) 2	1.230
	CNS0095612	Silvery flower (tetraploid) 3	0.923
	CNS0095613	Golden flower (tetraploid) 1	0.308
	CNS0095614	Golden flower (tetraploid) 2	0.965
	CNS0095615	Golden flower (tetraploid) 3	0.762
CRA001975	CRR073297	Stem 1	6.870
	CRR073298	Stem 2	6.392
	CRR073299	Stem 3	3.968
	CRR073300	Leaf 1	7.632
	CRR073301	Leaf 2	8.003
	CRR073302	Leaf 3	3.754
	CRR073303	Juvenile bud 1	3.637
	CRR073304	Juvenile bud 2	2.203
	CRR073305	Juvenile bud 3	3.717
	CRR073306	Third green 1	1.081
	CRR073307	Third green 2	1.012
	CRR073308	Third green 3	1.091
	CRR073309	Second white 1	0.985
	CRR073310	Second white 2	0.450
	CRR073311	Second white 3	0.747
	CRR073312	Silver flowering 1	0.664
	CRR073313	Silver flowering 2	0.959
	CRR073314	Silver flowering 3	0.151
	CRR073315	Gold flowering 1	0.798
	CRR073316	Gold flowering 2	1.887
	CRR073317	Gold flowering 3	0.630
	CRR073318	Tawny withering 1	2.957
	CRR073319	Tawny withering 2	2.832
	CRR073320	Tawny withering 3	4.003