Gene detail

Detail information of GWHGAAZE011699

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760410.1	3.03923E-86	PREDICTED: 3-dehydrosphinganine reductase TSC10A-like [Nicotiana sylvestris]
Swissprot	tr\|Q0WRJ2\|TC10A_ARATH	5E-74	3-dehydrosphinganine reductase TSC10A
trEMBL	tr\|M0ZYK0\|M0ZYK0_SOLTU	2E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400010802}
TAIR10	AT3G06060.1	9E-57	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71655846	71656436	+
GWHAAZE00000003	mRNA	71655846	71656436	+
GWHAAZE00000003	exon	71655846	71656436	+
GWHAAZE00000003	CDS	71655846	71656436	+

Transcript Sequence
>GWHTAAZE011711 ATGGCGGACTCAACCCTCGCATTCCTCTCTCTCCTCCTCCTTCTCCCTTTCTCTCTCATCCTCTTCCTCTTCCTAATCATCCGCCCCCGCCCCGCCAAGGTCCCAATCAAGAACCGCCACGTCTTCATCACCGGCGGATCTAGCGGAATCGGCCTAGCCCTAGCTCACAGGGCCGCATCGGAGGGTGCTCGGGTCTCCATCCTCGCTCGGAACCAAAACAAGCTCGACGAAGCCAGGGAGGCGATTAAACTCTCCACCGGATTAGAGGTCGCCGTTTTCAGCGCCGATGTTAGGGATTATGACGCCGTTAAGCGAGCCGTGGAGGAAGCGGGGGATGTTGATGTGTTGGTGTGTAATCAAGGGGTTTTTGTTCCGGAAGAACTGGAGAGTCAGAGTTTGGAGGAGGTGAAGTTTATGATGGATGTGAATGTGATGGGGACTTTTCATTTGATTAAGGCTGCTTTGCCTGGGATGAAGAATCGAGGTGATCGAGGGGCGGGTTCGATTGCGATTATTTCTTCTCAGGCTGGGCAGGTATTTCTCAAGCCTTGTTTTTTTAGCCTCCTCCAAATGCTGAACACTGAATATTAA

Network for GWHGAAZE011699

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	40	179	4.50E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04708	KDSR	Metabolic pathways	map01100
K04708	KDSR	Sphingolipid metabolism	map00600

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.296
	SRR3591706	second leaf	4.098
	SRR3591707	mature leaf	3.875
	SRR3591708	Shoot apex	10.971
	SRR3591709	Stem	8.718
	SRR3591710	White floral bud	8.154
	SRR3591711	White flower	7.518
	SRR3591712	Green floral bud	10.731
	SRR3591713	Yellow flower	6.934
SRP173429	SRR8316895	Juvenile bud stage	5.084
	SRR8316896	Juvenile bud stage	9.141
	SRR8316897	Juvenile bud stage	0.202
	SRR8316894	Third green stage	2.763
	SRR8316900	Third green stage	9.034
	SRR8316901	Third green stage	12.028
	SRR8316898	Complete white stage	6.178
	SRR8316899	Complete white stage	11.870
	SRR8316903	Complete white stage	10.018
	SRR8316902	Silver flowering stage	4.992
	SRR8316904	Silver flowering stage	4.176
	SRR8316905	Silver flowering stage	5.154
	SRR8316906	Gold flowering stage	8.583
	SRR8316907	Gold flowering stage	9.925
	SRR8316908	Gold flowering stage	4.181
SRP132670	SRR6706286	Control	17.266
	SRR6706287	Light intensity 50%	18.072
	SRR6706288	Light intensity 20%	19.438
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.584
	CNS0095593	Slightly white alabastrum(diploid) 2	6.120
	CNS0095594	Slightly white alabastrum(diploid) 3	5.400
	CNS0095595	Whole white alabastrum(diploid) 2	5.893
	CNS0095596	Whole white alabastrum(diploid) 3	6.048
	CNS0095597	Whole white alabastrum(diploid) 4	4.389
	CNS0095598	Silvery flower (diploied) 1	6.810
	CNS0095599	Silvery flower (diploied) 2	4.678
	CNS0095600	Silvery flower (diploied) 3	9.112
	CNS0095601	Golden flower (diploid) 1	6.238
	CNS0095602	Golden flower (diploid) 2	9.175
	CNS0095603	Golden flower (diploid) 3	8.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.190
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.265
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.953
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.075
	CNS0095610	Silvery flower (tetraploid) 1	2.551
	CNS0095611	Silvery flower (tetraploid) 2	2.582
	CNS0095612	Silvery flower (tetraploid) 3	2.873
	CNS0095613	Golden flower (tetraploid) 1	2.115
	CNS0095614	Golden flower (tetraploid) 2	4.042
	CNS0095615	Golden flower (tetraploid) 3	1.693
CRA001975	CRR073297	Stem 1	10.122
	CRR073298	Stem 2	12.595
	CRR073299	Stem 3	11.235
	CRR073300	Leaf 1	14.875
	CRR073301	Leaf 2	11.037
	CRR073302	Leaf 3	7.606
	CRR073303	Juvenile bud 1	11.450
	CRR073304	Juvenile bud 2	9.020
	CRR073305	Juvenile bud 3	10.915
	CRR073306	Third green 1	8.776
	CRR073307	Third green 2	9.488
	CRR073308	Third green 3	8.229
	CRR073309	Second white 1	6.547
	CRR073310	Second white 2	4.636
	CRR073311	Second white 3	3.946
	CRR073312	Silver flowering 1	4.042
	CRR073313	Silver flowering 2	6.549
	CRR073314	Silver flowering 3	5.988
	CRR073315	Gold flowering 1	2.930
	CRR073316	Gold flowering 2	5.082
	CRR073317	Gold flowering 3	4.417
	CRR073318	Tawny withering 1	10.278
	CRR073319	Tawny withering 2	3.763
	CRR073320	Tawny withering 3	11.346