Gene detail

Detail information of GWHGAAZE011706

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011098666.1	PREDICTED: ARF guanine-nucleotide exchange factor GNOM-like [Sesamum indicum]
Swissprot	tr\|Q42510\|GNOM_ARATH	ARF guanine-nucleotide exchange factor GNOM
trEMBL	tr\|A0A067L230\|A0A067L230_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41243.1}
TAIR10	AT1G13980.2	sec7 domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71786007	71790698	+
GWHAAZE00000003	mRNA	71786007	71790698	+
GWHAAZE00000003	exon	71786007	71786117	+
GWHAAZE00000003	exon	71787079	71787112	+
GWHAAZE00000003	exon	71787197	71789117	+
GWHAAZE00000003	exon	71789210	71790079	+
GWHAAZE00000003	exon	71790164	71790698	+
GWHAAZE00000003	CDS	71786007	71786117	+
GWHAAZE00000003	CDS	71787079	71787112	+
GWHAAZE00000003	CDS	71787197	71789117	+
GWHAAZE00000003	CDS	71789210	71790079	+
GWHAAZE00000003	CDS	71790164	71790698	+

Transcript Sequence
>GWHTAAZE011718 ATGGTTTGGCAGGGTAGATTGTCTTTGCACAGAAGTAGGCCTTCCGGAGGCAATTTAGCACTTACGGTGAATTCAGAAATAGGTGCAGTTTTGGCTGTTATGAGGAGAAATGTCAGTGTGAGAGATGCAGATCACACTTCCGGAAACACATCTGAAGGGGATGGAAATATAATGGAGGCTGGTCAAGGGAAAGAGGCTGCTCAGAGTGGAGACCATCTTATGAAGGAGCCGTATGGGGTCCCGTGCATGGTGGAAATATTTCACTTCTTATGTTCCCTTTTGAATATTATCGAGCAACACAGCGGAATCGGTCCGAGATCAAACCCTATAGCATATGATGAAGATGTCCCCCTATTTGCATTAGGGTTAATCAATTCGGCTATTGAATTGGGCGGGGCCTCATTTGCCCATCACCCAAAACTACTGGCTTTGATACAAGATGAACTTTTCCGCCACTTGATGCAGTTCGGTTTGTCAATGAGTTCGCTAATCCTTTCCACAGTATGTAGCATTGTTCTTAATCTGTATCATCATTTGCGTACCAAGCTTAAACTACAGCTCGAAGCTTTCTTCTCTTGTGTCCTTTTGAGAATCGCACAAAGCAAGCATGGAGCTTCGTATCAACAGCAGGAGGTTGCTATGGAGACACTTGTTGACCTTTGTAGACAACAGACGTTTATGGCTGAGATCTATGTGAATTTCGATTGTGATATATCTTGCAATAATGTATTTGAAGAACTCACCAATTTGTTATCAAAAAGCGCTTTCCCGGTGAACGGCCCTTTATTTGCAATGCACATTCTTGCTCTCAATGGCCAATTCGCCATGATCCCGGGCATGGCCGAAAGAACATTCAGCGGGTTGCCAGCTTCGCTAAGTCTTGAAGATTACCAACCGTTTTGGCTCGTGAAATGCAATAACTACGATGAACCTAGTCAGTGGGTCCCATTTGCTCATAAGATGAAGTTCATCAAGAGGAAATTGATAATCGGAGCTGATCACTTCAACCGGGCCCCTATGAAAGGTCTTGAATTTCTCCAAGGAATGCATCTTTTGCCCGATAAACTCGACTCACAAAGTGTAGCTTGCTTTATTCGGTACACAACCAGGTTAGATAAGAATCTTGTTGGGGATTTTCTTGGAAATCACGATGAATTTTGTATTGAAGTGCTTCACGAATTCGCTCGGACTTTTGATTTTTCCAACATGAATTTGGACACTGCATTGCGGGTTTTATTGGAGTCTTTTAAATTGCCTGGAGAGTTGCAAAAGATACAAAGGGTTCTTGAGGCCTTTGCGGAAAGATATTATGAACAGTCACCACATATCTTGGCCAACAAAGATGCTGCTCTTTTACTGTCGTATTCATTAATATTGCTTAACACAGACCAACACAATGCTCAGGTGAAGAAGAAGATGACAGAGGAAGATTTTATACGTAACAATTGGCACATAAACAGAGGGAACGATCTCCCTCGTGAGTACTTATGTGAGCTTTACCACTCAATCTGCATGGATGAGATCCGCATGACCCCCGAGACAGGTGCCGGCTTTCCAGTGATGACATCAAGCCATTGGATTGGTCTGAAGCACAAATCGAAACAATCCGCTCCGTTCATCGTCTGCGATTCGAGAGAGAATCTCGACTTTGATATGTTTAGAATTCTGTCGAGTCCCACTATTGCCGCCCTCTCTGTGGTTTACGATCATGTTGAGCAGGAAGATGTTTTACAAACATGCATTGACGGGTTCTTAGCCGTTGCTAAAATTGCAGCTCGCTATAGGCTTGATGATGTTTTGGATGATTTGGTCGTATCTCTTTGTAAATTTACAACCCTTTTGCTTCCACTATCTGTTGAAGAATCTATCCTTGCATTTGGGGATGATACTAAAGCTAGAATGGCGACGGTGGCAGCTTTCACCATAGCAAATAAATACGGTGATTATATACGCGGTGGTTGGAAAAACATTCTTGATTGCATTTTGGGCTTGCACCGGCTAGGCCTTGTTCCTACCCATTTGGCCAGTGATGCAACCGATGAGTTGGACCCTGCACCTGAACTTGACCAATTCTTGTATCTTGATGCAGACGAGCCAGCCCCACAACCTATGGAAGAACAACTTTTAGCTCATCAACAGTCTCTTCAGGCAGTTCAAAATTGCCACATTGATAATTTTTTTACAGAAAGTAAGTTTTTGCAAGCCGAGTCCCTGTCACAGCTAGCACGGGCTCTCATCTTAGCTGCGGGCCAGTCCTACAAGGGGAATAATTCTGTTGAAAATGAAGACATTGCGGTTTTTTGCTTGGAGTTGCTGATTGCAGTGACGTTAAATAATGGGGATAGAATTATGCTTCTTTGGCAGGGCATTTATGAGCACATAGCCAACGTTGTACAATCAGCTGTAATGCCTTGTAGCTTAGTTGAGAAGGCCGTGTTTGGCCTCCTTCGTATATGCCAACGATTACTCCCTTACAAGGAGAACTTGACCGACGAGCTACTCAAGTCTTTACAACTGGTTCTAAAACTCGACGCTCGCGTTGCTGATGCGTACTGTGAGCAAATCACAAATGAAGTTATGCGCCTTGTTAAGGCAAACGCAATGAAGATCCGATCTCATGTGGGGTGGCGCACCATAACCTCACTGCTCTCCATCACAGCCAGGCACCCAGAAGCATCTGAGGTTGGGTTTCAGACCCTCGAGTTCATCATGTCTGATGGGGCTCACCTCTTACCGGCGAACTATGTCCTGTGTGTGAATGCGGCTCGGCAGTTTGCTGAATCCCGGGTTGGGAATATTGAACAGTCAACTAAATCTTTGGATCTGATGGCGAATTCATTGGTCTGCCTCGTTCGATGGTCTTGCAAGACAAAAGAAGCCGTAGGGGAAGAGGCTTTGGCTCTTGCGAAAATTTATCAAGATATCAGTGAAATGTGGTGCTTAACCGGAAGGGATGGTATCCATATTCTGAATGAGCTTTGGTTACAATGTTTCGATCAGGTGATCTTCACGTTGCTTGATGAAATTTTGCAAATAGCACAGGATAATTCCCCAAAGGAGTATCGGAACATGGAAACGTCGCTATTTTTGTGCTTGAAACTTTTGTCGAAAGTCTTTTTACGGTCGATGGAGGATCTTTATCAGTTGAGTTCCTTTTGTAGACTATGGGTTGGGGTACTTGATTGTATGGAGAGATATATGAAGGCTAAATTAAGAGGTAAAAGGAGTGAGAAGGTACATGAATTAGCACCTGAGCTCCTCAAGAACACCTTACTTGTGATGAAGACTCGAGGAATTCTTGTGGAAAATGATTCCGTTGGTGGTGAAAGTTTCTGGCATTTAACGTGGTTACATGTGAAAAATATCTCCCCGTCTTTGCAGTTAGAAGTTTTCCCCGAGCACAATATAGCAGGGTGTAGTCCGCTCCCTGATGGGAATTTAGTGGTTCAGTCTAGCGAGATGACGACCTGA

Network for GWHGAAZE011706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.8	Sec7_N	81	243	5.00E-34
PF01369.21	Sec7	325	508	2.00E-63

Protein Sequence

>GWHPAAZE011712
MVWQGRLSLHRSRPSGGNLALTVNSEIGAVLAVMRRNVSVRDADHTSGNTSEGDGNIMEAGQGKEAAQSGDHLMKEPYGVPCMVEIFHFLCSLLNIIEQHSGIGPRSNPIAYDEDVPLFALGLINSAIELGGASFAHHPKLLALIQDELFRHLMQFGLSMSSLILSTVCSIVLNLYHHLRTKLKLQLEAFFSCVLLRIAQSKHGASYQQQEVAMETLVDLCRQQTFMAEIYVNFDCDISCNNVFEELTNLLSKSAFPVNGPLFAMHILALNGQFAMIPGMAERTFSGLPASLSLEDYQPFWLVKCNNYDEPSQWVPFAHKMKFIKRKLIIGADHFNRAPMKGLEFLQGMHLLPDKLDSQSVACFIRYTTRLDKNLVGDFLGNHDEFCIEVLHEFARTFDFSNMNLDTALRVLLESFKLPGELQKIQRVLEAFAERYYEQSPHILANKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRNNWHINRGNDLPREYLCELYHSICMDEIRMTPETGAGFPVMTSSHWIGLKHKSKQSAPFIVCDSRENLDFDMFRILSSPTIAALSVVYDHVEQEDVLQTCIDGFLAVAKIAARYRLDDVLDDLVVSLCKFTTLLLPLSVEESILAFGDDTKARMATVAAFTIANKYGDYIRGGWKNILDCILGLHRLGLVPTHLASDATDELDPAPELDQFLYLDADEPAPQPMEEQLLAHQQSLQAVQNCHIDNFFTESKFLQAESLSQLARALILAAGQSYKGNNSVENEDIAVFCLELLIAVTLNNGDRIMLLWQGIYEHIANVVQSAVMPCSLVEKAVFGLLRICQRLLPYKENLTDELLKSLQLVLKLDARVADAYCEQITNEVMRLVKANAMKIRSHVGWRTITSLLSITARHPEASEVGFQTLEFIMSDGAHLLPANYVLCVNAARQFAESRVGNIEQSTKSLDLMANSLVCLVRWSCKTKEAVGEEALALAKIYQDISEMWCLTGRDGIHILNELWLQCFDQVIFTLLDEILQIAQDNSPKEYRNMETSLFLCLKLLSKVFLRSMEDLYQLSSFCRLWVGVLDCMERYMKAKLRGKRSEKVHELAPELLKNTLLVMKTRGILVENDSVGGESFWHLTWLHVKNISPSLQLEVFPEHNIAGCSPLPDGNLVVQSSEMTT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.587
	SRR3591706	second leaf	0.511
	SRR3591707	mature leaf	0.862
	SRR3591708	Shoot apex	0.577
	SRR3591709	Stem	0.842
	SRR3591710	White floral bud	0.199
	SRR3591711	White flower	0.479
	SRR3591712	Green floral bud	0.715
	SRR3591713	Yellow flower	0.627
SRP173429	SRR8316895	Juvenile bud stage	1.286
	SRR8316896	Juvenile bud stage	2.202
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.988
	SRR8316900	Third green stage	3.380
	SRR8316901	Third green stage	2.818
	SRR8316898	Complete white stage	1.301
	SRR8316899	Complete white stage	3.291
	SRR8316903	Complete white stage	2.296
	SRR8316902	Silver flowering stage	1.365
	SRR8316904	Silver flowering stage	2.105
	SRR8316905	Silver flowering stage	0.942
	SRR8316906	Gold flowering stage	2.899
	SRR8316907	Gold flowering stage	2.302
	SRR8316908	Gold flowering stage	0.954
SRP132670	SRR6706286	Control	2.674
	SRR6706287	Light intensity 50%	2.516
	SRR6706288	Light intensity 20%	3.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.558
	CNS0095593	Slightly white alabastrum(diploid) 2	1.272
	CNS0095594	Slightly white alabastrum(diploid) 3	1.745
	CNS0095595	Whole white alabastrum(diploid) 2	1.539
	CNS0095596	Whole white alabastrum(diploid) 3	1.606
	CNS0095597	Whole white alabastrum(diploid) 4	1.728
	CNS0095598	Silvery flower (diploied) 1	1.919
	CNS0095599	Silvery flower (diploied) 2	2.248
	CNS0095600	Silvery flower (diploied) 3	6.099
	CNS0095601	Golden flower (diploid) 1	2.664
	CNS0095602	Golden flower (diploid) 2	5.285
	CNS0095603	Golden flower (diploid) 3	4.918
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.568
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.522
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.779
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.327
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.407
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.677
	CNS0095610	Silvery flower (tetraploid) 1	0.610
	CNS0095611	Silvery flower (tetraploid) 2	0.605
	CNS0095612	Silvery flower (tetraploid) 3	0.472
	CNS0095613	Golden flower (tetraploid) 1	0.442
	CNS0095614	Golden flower (tetraploid) 2	0.660
	CNS0095615	Golden flower (tetraploid) 3	0.722
CRA001975	CRR073297	Stem 1	1.922
	CRR073298	Stem 2	1.720
	CRR073299	Stem 3	1.340
	CRR073300	Leaf 1	3.445
	CRR073301	Leaf 2	2.104
	CRR073302	Leaf 3	2.205
	CRR073303	Juvenile bud 1	1.987
	CRR073304	Juvenile bud 2	1.857
	CRR073305	Juvenile bud 3	2.909
	CRR073306	Third green 1	1.302
	CRR073307	Third green 2	0.652
	CRR073308	Third green 3	0.985
	CRR073309	Second white 1	0.887
	CRR073310	Second white 2	1.563
	CRR073311	Second white 3	1.179
	CRR073312	Silver flowering 1	1.020
	CRR073313	Silver flowering 2	0.719
	CRR073314	Silver flowering 3	0.898
	CRR073315	Gold flowering 1	0.971
	CRR073316	Gold flowering 2	2.524
	CRR073317	Gold flowering 3	1.280
	CRR073318	Tawny withering 1	1.653
	CRR073319	Tawny withering 2	0.660
	CRR073320	Tawny withering 3	1.967