Detail information of GWHGAAZE011714


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003632853.22.0925E-63PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera]
Swissprottr|Q9LTV8|PP224_ARATH2E-35Pentatricopeptide repeat-containing protein At3g12770
trEMBLtr|F6HY28|F6HY28_VITVI8E-64Putative uncharacterized protein {ECO:0000313|EMBL:CCB59351.1}
TAIR10AT3G12770.12E-31mitochondrial editing factor 22

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7189003771890549+
GWHAAZE00000003mRNA7189003771890549+
GWHAAZE00000003exon7189003771890549+
GWHAAZE00000003CDS7189003771890549+
Transcript Sequence

Network for GWHGAAZE011714

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.21PPR59880.0002
PF01535.21PPR1321572.60E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.729
SRR3591706second leaf0.180
SRR3591707mature leaf0.268
SRR3591708Shoot apex0.596
SRR3591709Stem0.134
SRR3591710White floral bud2.659
SRR3591711White flower0.291
SRR3591712Green floral bud1.479
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.108
SRR8316897Juvenile bud stage 0.052
SRR8316894Third green stage 0.118
SRR8316900Third green stage 0.401
SRR8316901Third green stage 0.068
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.107
SRR8316903Complete white stage 0.169
SRR8316902Silver flowering stage0.008
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.018
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.159
SRR6706287Light intensity 50%0.486
SRR6706288Light intensity 20%0.391
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.315
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.194
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.045
CNS0095602Golden flower (diploid) 20.384
CNS0095603Golden flower (diploid) 30.164
CNS0095604Slightly white alabastrum(tetraploid) 10.321
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.537
CNS0095607Whole white alabastrum(tetraploid) 10.048
CNS0095608Whole white alabastrum(tetraploid) 20.012
CNS0095609Whole white alabastrum(tetraploid) 30.100
CNS0095610Silvery flower (tetraploid) 10.247
CNS0095611Silvery flower (tetraploid) 20.144
CNS0095612Silvery flower (tetraploid) 30.123
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.214
CNS0095615Golden flower (tetraploid) 30.389
CRA001975CRR073297Stem 10.490
CRR073298Stem 20.420
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.264
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.587
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.012
CRR073310Second white 20.000
CRR073311Second white 30.140
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.202
CRR073319Tawny withering 20.276
CRR073320Tawny withering 30.802