Detail information of GWHGAAZE011718


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO99147.12.60302E-97unnamed protein product [Coffea canephora]
Swissprottr|O24542|AX22D_VIGRR1E-85Auxin-induced protein 22D
trEMBLtr|A0A068TSZ6|A0A068TSZ6_COFCA1E-97Auxin-responsive protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT5G43700.18E-61AUX/IAA transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7193238171933608+
GWHAAZE00000003mRNA7193238171933608+
GWHAAZE00000003exon7193238171932571+
GWHAAZE00000003exon7193268271932881+
GWHAAZE00000003exon7193300571933104+
GWHAAZE00000003exon7193353371933608+
GWHAAZE00000003CDS7193238171932571+
GWHAAZE00000003CDS7193268271932881+
GWHAAZE00000003CDS7193300571933104+
GWHAAZE00000003CDS7193353371933608+
Transcript Sequence

Network for GWHGAAZE011718

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA501855.50E-58
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
K14484IAA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf60.459
SRR3591706second leaf7.788
SRR3591707mature leaf0.260
SRR3591708Shoot apex14.353
SRR3591709Stem50.378
SRR3591710White floral bud27.002
SRR3591711White flower83.419
SRR3591712Green floral bud1.516
SRR3591713Yellow flower15.126
SRP173429 SRR8316895Juvenile bud stage 1.313
SRR8316896Juvenile bud stage 1.021
SRR8316897Juvenile bud stage 0.703
SRR8316894Third green stage 0.886
SRR8316900Third green stage 0.673
SRR8316901Third green stage 0.837
SRR8316898Complete white stage 17.847
SRR8316899Complete white stage 1.986
SRR8316903Complete white stage 23.724
SRR8316902Silver flowering stage128.639
SRR8316904Silver flowering stage161.757
SRR8316905Silver flowering stage108.354
SRR8316906Gold flowering stage 156.465
SRR8316907Gold flowering stage 146.998
SRR8316908Gold flowering stage 187.888
SRP132670SRR6706286Control4.167
SRR6706287Light intensity 50%5.029
SRR6706288Light intensity 20%2.956
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.417
CNS0095593Slightly white alabastrum(diploid) 23.295
CNS0095594Slightly white alabastrum(diploid) 31.927
CNS0095595Whole white alabastrum(diploid) 22.941
CNS0095596Whole white alabastrum(diploid) 31.034
CNS0095597Whole white alabastrum(diploid) 41.547
CNS0095598Silvery flower (diploied) 111.279
CNS0095599Silvery flower (diploied) 214.365
CNS0095600Silvery flower (diploied) 337.331
CNS0095601Golden flower (diploid) 13.026
CNS0095602Golden flower (diploid) 27.669
CNS0095603Golden flower (diploid) 310.225
CNS0095604Slightly white alabastrum(tetraploid) 12.640
CNS0095605Slightly white alabastrum(tetraploid) 22.978
CNS0095606Slightly white alabastrum(tetraploid) 38.537
CNS0095607Whole white alabastrum(tetraploid) 12.576
CNS0095608Whole white alabastrum(tetraploid) 21.077
CNS0095609Whole white alabastrum(tetraploid) 30.897
CNS0095610Silvery flower (tetraploid) 135.050
CNS0095611Silvery flower (tetraploid) 220.403
CNS0095612Silvery flower (tetraploid) 358.597
CNS0095613Golden flower (tetraploid) 12.343
CNS0095614Golden flower (tetraploid) 22.222
CNS0095615Golden flower (tetraploid) 33.388
CRA001975CRR073297Stem 13.295
CRR073298Stem 22.024
CRR073299Stem 33.373
CRR073300Leaf 11.452
CRR073301Leaf 23.044
CRR073302Leaf 32.430
CRR073303Juvenile bud 12.508
CRR073304Juvenile bud 24.586
CRR073305Juvenile bud 31.973
CRR073306Third green 1750.204
CRR073307Third green 2697.980
CRR073308Third green 3596.255
CRR073309Second white 1394.130
CRR073310Second white 2450.084
CRR073311Second white 3239.578
CRR073312Silver flowering 148.679
CRR073313Silver flowering 226.578
CRR073314Silver flowering 331.968
CRR073315Gold flowering 12.780
CRR073316Gold flowering 21.101
CRR073317Gold flowering 30.419
CRR073318Tawny withering 11.978
CRR073319Tawny withering 20.431
CRR073320Tawny withering 32.806