Gene detail

Detail information of GWHGAAZE011723

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004247624.1	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Solanum lycopersicum]
Swissprot	tr\|O48780\|KCS11_ARATH	3-ketoacyl-CoA synthase 11
trEMBL	tr\|K4CVT1\|K4CVT1_SOLLC	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G26640.1	3-ketoacyl-CoA synthase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	72013356	72015487	+
GWHAAZE00000003	mRNA	72013356	72015487	+
GWHAAZE00000003	exon	72013356	72014117	+
GWHAAZE00000003	exon	72014675	72015487	+
GWHAAZE00000003	five_prime_UTR	72013356	72013421	+
GWHAAZE00000003	CDS	72013422	72014117	+
GWHAAZE00000003	CDS	72014675	72015487	+

Transcript Sequence
>GWHTAAZE011735 ACCATCTTCTTTATATTACTTTGTGCAAACAAGCCAAATCAGTTATTACTCAATCAATATTGCACAATGGAATATGAGAAGAACCAAAATCAAATGAAGCTTATTTACCATTATTCAATTACATACTTCGAATATATAATCCTCACACCACTCATCCTAGCCCTATCAATTCATCTCTCAACTTTTACTCTTGGAGATGCATTCAACCTATACAACAACCTCAAGCAAAACCCGATTCCACTCCTTTTTTTCGCATCTGTAACGATTATCTTGTCCGTCGTTTACTACATGAGCCGTCCTCAAGACGTTTACTTAGTAAATTATACAGCTTACAAGCCTAGCCCAAGTCTTATGACCACCAAGGAGCAATTTATGTTATTTGCTACCAAATATGGATCCTTTAGCGAGGAGAGCTTAGAGTTTCAGAAGAAAATTCTTGAGAGGTCAGGTTTGGGGGATAAGACGTATTTCCCTGAAGCAGTGAAGAGAGTACCACCGGACTATAGCTTCGGTGAGGCCACGAAAGAGGCGGAGTTGGTGATGTTTGGAGCTGTGGACGATCTCTTAGCGAAAACAAGTGTTAAGACCAAAGATATTGGGATTCTTGTGGTGAATTGTGGCAGTTTTACTAGAGTACCTTCTCTTTCAGCAGCTGTTGTGAACCGTTACAAGCTTCGTACGGATATTTTGAGCTATAGTATTGGTGGCATGGGTTGTAGTGCTGGCATTATTTCCATTGACCTAGCCAGACGCCTTTTACAGGTGAGCCCAAACACTTATGCGCTAGTGGTGAGCATAGAAGTTATAGGCCTTAACTGGTACCAAGGTAACAATAGACAGATGCTTCTCCCGAATTGCATTTTTCGCATGGGAGGGGCCGCGGTCCTCCTTTCAAATCATTCGTCTGATCGTGGTCATTCCAAGTATCAACTCTTCCAGACTGTACTTACCCACAAAGGCGCAGATGATAAAAGTTACAGGTGCGTGGTTCGCGAAGAGGATGAAGGGAAGGCACTTGGTCTCTCACTCTCAAAAGATATAATGGCGGTCGCCGGAGAGACTTTAAAAACAAATATCACTACACTTGGGCCGCTAGTGCTTCCCGTATCGGAGCAACTTCTATTTCTTGCTACTTCTATTGCGAGAAATATTTTCAAAATGAAGATCAAGCCGTACGTACCTGATTTCAAACTTGCTTTCGAGCATTTTTGCATTCATTCAGGAGGGAGAGCGGTTTTGGATGAGGTAGAGAAGAATCTAGAGCTCACTAAATGGTATATGGAACCTTCTAGAATGACTCTTTATAGATATGGAAACACTTCTAGTAGTTCATTGTGGTATGAGTTGGCGTATTCGGAGGCGAAGGGAAGGATCAAGAAAGGTGACAGGGTTTGGCAAATTGCATTCGGGTCAGGTTTCAAGTGTAATAGCGCTGTATGGTGCGCTTTGCGTAATATTAATCCTCTTAATGACAAAAACCCCTGGATGGACGAGATTAATGATTTTCCTGTCGAGATACCAAGAGTAGACCCTATCCATATCGACAAATCTAAAGTGGAGCAATTCCGTCCTTGA

Network for GWHGAAZE011723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	73	361	6.10E-124
PF08541.11	ACP_syn_III_C	379	458	1.80E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.266
	SRR3591707	mature leaf	0.145
	SRR3591708	Shoot apex	0.756
	SRR3591709	Stem	0.120
	SRR3591710	White floral bud	0.168
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.377
	SRR3591713	Yellow flower	0.316
SRP173429	SRR8316895	Juvenile bud stage	2.526
	SRR8316896	Juvenile bud stage	2.812
	SRR8316897	Juvenile bud stage	1.660
	SRR8316894	Third green stage	1.003
	SRR8316900	Third green stage	2.656
	SRR8316901	Third green stage	3.299
	SRR8316898	Complete white stage	0.548
	SRR8316899	Complete white stage	3.528
	SRR8316903	Complete white stage	0.814
	SRR8316902	Silver flowering stage	0.588
	SRR8316904	Silver flowering stage	0.756
	SRR8316905	Silver flowering stage	0.218
	SRR8316906	Gold flowering stage	0.551
	SRR8316907	Gold flowering stage	0.925
	SRR8316908	Gold flowering stage	0.498
SRP132670	SRR6706286	Control	0.295
	SRR6706287	Light intensity 50%	0.297
	SRR6706288	Light intensity 20%	0.275
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.792
	CNS0095593	Slightly white alabastrum(diploid) 2	10.870
	CNS0095594	Slightly white alabastrum(diploid) 3	7.043
	CNS0095595	Whole white alabastrum(diploid) 2	7.308
	CNS0095596	Whole white alabastrum(diploid) 3	5.811
	CNS0095597	Whole white alabastrum(diploid) 4	4.175
	CNS0095598	Silvery flower (diploied) 1	3.623
	CNS0095599	Silvery flower (diploied) 2	6.055
	CNS0095600	Silvery flower (diploied) 3	1.980
	CNS0095601	Golden flower (diploid) 1	0.711
	CNS0095602	Golden flower (diploid) 2	1.226
	CNS0095603	Golden flower (diploid) 3	1.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.330
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.257
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.036
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.017
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.322
	CNS0095610	Silvery flower (tetraploid) 1	2.274
	CNS0095611	Silvery flower (tetraploid) 2	1.316
	CNS0095612	Silvery flower (tetraploid) 3	2.641
	CNS0095613	Golden flower (tetraploid) 1	3.505
	CNS0095614	Golden flower (tetraploid) 2	2.133
	CNS0095615	Golden flower (tetraploid) 3	0.498
CRA001975	CRR073297	Stem 1	5.500
	CRR073298	Stem 2	4.070
	CRR073299	Stem 3	0.930
	CRR073300	Leaf 1	2.075
	CRR073301	Leaf 2	3.288
	CRR073302	Leaf 3	0.573
	CRR073303	Juvenile bud 1	1.576
	CRR073304	Juvenile bud 2	0.381
	CRR073305	Juvenile bud 3	1.365
	CRR073306	Third green 1	0.346
	CRR073307	Third green 2	0.868
	CRR073308	Third green 3	0.914
	CRR073309	Second white 1	0.175
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.021
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.034
	CRR073317	Gold flowering 3	0.081
	CRR073318	Tawny withering 1	0.171
	CRR073319	Tawny withering 2	0.034
	CRR073320	Tawny withering 3	0.145