Detail information of GWHGAAZE011727


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010102294.10GDP-mannose 3,5-epimerase 1 [Morus notabilis]
Swissprottr|A3C4S4|GME1_ORYSJ0GDP-mannose 3,5-epimerase 1
trEMBLtr|W9RI64|W9RI64_9ROSA0GDP-mannose 3,5-epimerase 1 {ECO:0000313|EMBL:EXB93237.1}
TAIR10AT5G28840.20GDP-D-mannose 3',5'-epimerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7206584572069796+
GWHAAZE00000003mRNA7206584572069796+
GWHAAZE00000003exon7206584572066254+
GWHAAZE00000003exon7206698772067080+
GWHAAZE00000003exon7206715972067288+
GWHAAZE00000003exon7206788372068015+
GWHAAZE00000003exon7206869672068903+
GWHAAZE00000003exon7206964172069796+
GWHAAZE00000003CDS7206584572066254+
GWHAAZE00000003CDS7206698772067080+
GWHAAZE00000003CDS7206715972067288+
GWHAAZE00000003CDS7206788372068015+
GWHAAZE00000003CDS7206869672068903+
GWHAAZE00000003CDS7206964172069796+
Transcript Sequence

Network for GWHGAAZE011727

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01370.22Epimerase302693.50E-46
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10046GME Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0047918molecular_functionGDP-mannose 3,5-epimerase activity
GO:0051287molecular_functionNAD binding
GO:0003824molecular_functioncatalytic activity
GO:0050662molecular_functioncoenzyme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf194.746
SRR3591706second leaf319.816
SRR3591707mature leaf264.027
SRR3591708Shoot apex185.565
SRR3591709Stem188.396
SRR3591710White floral bud222.019
SRR3591711White flower158.159
SRR3591712Green floral bud156.105
SRR3591713Yellow flower71.935
SRP173429 SRR8316895Juvenile bud stage 144.647
SRR8316896Juvenile bud stage 165.472
SRR8316897Juvenile bud stage 81.702
SRR8316894Third green stage 73.956
SRR8316900Third green stage 217.269
SRR8316901Third green stage 195.685
SRR8316898Complete white stage 96.724
SRR8316899Complete white stage 232.078
SRR8316903Complete white stage 147.885
SRR8316902Silver flowering stage58.513
SRR8316904Silver flowering stage95.676
SRR8316905Silver flowering stage47.828
SRR8316906Gold flowering stage 96.136
SRR8316907Gold flowering stage 100.603
SRR8316908Gold flowering stage 95.698
SRP132670SRR6706286Control231.129
SRR6706287Light intensity 50%259.442
SRR6706288Light intensity 20%275.396
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1101.487
CNS0095593Slightly white alabastrum(diploid) 2114.773
CNS0095594Slightly white alabastrum(diploid) 393.328
CNS0095595Whole white alabastrum(diploid) 2109.248
CNS0095596Whole white alabastrum(diploid) 385.806
CNS0095597Whole white alabastrum(diploid) 4100.237
CNS0095598Silvery flower (diploied) 1291.040
CNS0095599Silvery flower (diploied) 2234.097
CNS0095600Silvery flower (diploied) 3138.210
CNS0095601Golden flower (diploid) 1149.640
CNS0095602Golden flower (diploid) 2156.864
CNS0095603Golden flower (diploid) 3149.198
CNS0095604Slightly white alabastrum(tetraploid) 1146.904
CNS0095605Slightly white alabastrum(tetraploid) 2104.856
CNS0095606Slightly white alabastrum(tetraploid) 3376.689
CNS0095607Whole white alabastrum(tetraploid) 199.223
CNS0095608Whole white alabastrum(tetraploid) 280.483
CNS0095609Whole white alabastrum(tetraploid) 3199.032
CNS0095610Silvery flower (tetraploid) 190.738
CNS0095611Silvery flower (tetraploid) 2127.188
CNS0095612Silvery flower (tetraploid) 389.042
CNS0095613Golden flower (tetraploid) 142.889
CNS0095614Golden flower (tetraploid) 269.304
CNS0095615Golden flower (tetraploid) 338.262
CRA001975CRR073297Stem 1269.891
CRR073298Stem 2250.427
CRR073299Stem 3374.003
CRR073300Leaf 1232.924
CRR073301Leaf 2231.514
CRR073302Leaf 3278.871
CRR073303Juvenile bud 1293.452
CRR073304Juvenile bud 2302.352
CRR073305Juvenile bud 3282.533
CRR073306Third green 1226.358
CRR073307Third green 2187.065
CRR073308Third green 3197.462
CRR073309Second white 1139.528
CRR073310Second white 280.659
CRR073311Second white 359.090
CRR073312Silver flowering 165.378
CRR073313Silver flowering 290.712
CRR073314Silver flowering 360.684
CRR073315Gold flowering 1344.528
CRR073316Gold flowering 2379.374
CRR073317Gold flowering 3432.857
CRR073318Tawny withering 1142.142
CRR073319Tawny withering 2139.711
CRR073320Tawny withering 3137.553