Gene detail

Detail information of GWHGAAZE011774

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090688.1	0	PREDICTED: homocysteine S-methyltransferase 2 [Sesamum indicum]
Swissprot	tr\|Q9M1W4\|HMT2_ARATH	0	Homocysteine S-methyltransferase 2
trEMBL	tr\|A0A068TS63\|A0A068TS63_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99091.1}
TAIR10	AT3G63250.1	1E-146	homocysteine methyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73024085	73031773	+
GWHAAZE00000003	mRNA	73024085	73031773	+
GWHAAZE00000003	exon	73024085	73024332	+
GWHAAZE00000003	exon	73027011	73027067	+
GWHAAZE00000003	exon	73027163	73027392	+
GWHAAZE00000003	exon	73028692	73028821	+
GWHAAZE00000003	exon	73028977	73029180	+
GWHAAZE00000003	exon	73029322	73029393	+
GWHAAZE00000003	exon	73031312	73031773	+
GWHAAZE00000003	five_prime_UTR	73024085	73024155	+
GWHAAZE00000003	CDS	73024156	73024332	+
GWHAAZE00000003	CDS	73027011	73027067	+
GWHAAZE00000003	CDS	73027163	73027392	+
GWHAAZE00000003	CDS	73028692	73028821	+
GWHAAZE00000003	CDS	73028977	73029180	+
GWHAAZE00000003	CDS	73029322	73029393	+
GWHAAZE00000003	CDS	73031312	73031458	+
GWHAAZE00000003	three_prime_UTR	73031459	73031773	+

Transcript Sequence
>GWHTAAZE011786 ACACTCTACAAATTGTTGATTGCTTAAAAACAATTCCCAAATATCAAAAACAATTTCAAGTTAATTGTGAAATGGGTTTAAAATCAGTCGAACAGTCGAGGCTTCTGTCGGATTTCCTCAGCCAGTGCGGTGGCTACGCCGTCATCGACGGCGGACTTGCGACGGAGCTCGAACGGCACGGCGCCGACCTCAATGATCCTTTGTGGAGCGCTAAATGCCTCCTCACTTCTCCTCATCTCGTCAGAAGGGTACACCTGGATTATCTTGAAGCCGGCGCCAATATCATAATATCTGCTTCTTATCAGGCTACCCTACAAGGCTTCGAGGCTAAGGGCATGTCTAGAGAAGAAGGTGAAACTCTACTAAGAAGAAGTGTGGAAATAGCATGTGAGGCACGGGATATATATTACGACAGAGCCACCAAAGGTTCTTGGGATGCCACGGGAAATGAAAACATTACTGAAAAACGTCCAGTCTTAGTCGCAGCTTCTGTGGGAAGCTATGGAGCTTACCTTGCCGATGGTTCCGAGTATAGTGGGATATACGGTGATGCCGTCACTTTGGAAACTCTGAAAGACTTTCACAGGAGAAGGGTTCAAGTTCTAGCTGAATCAGGCGCTGACCTAATTGCATTTGAGACAATCCCAAATAAATTGGAAGCGAAGGCCTACACTGAGCTTCTTGAAGAAGAAGACTTGAAGATTCCGGCCTGGTTTTCTTTCAATTCTAAGGATGGAACCAATGTGGTTAGTGGAGATTCTATATCCGAGTGTGCTTCATTAGCCGATTCATGTAACCAAGTTGTTGCTGTTGGAATCAATTGTACACCTCCTAGGTTTATTCATGGACTCATTCAATCGATTCAGACGGTGACAACTAAACCCATACTATTATATCCCAACAGTGGTGAGACTTATGATGCTGACAAAAAGGAGTGGGTGCCAACAACCGGAGTCGCAAACGAAGATTTTGTTTCTTACGTGAGCAAGTGGGTTGAAGCCGGGGCGTCTCTTATAGGAGGATGCTGCAGAACTACCCCAGACACTATCAAAGGTATTGCTAAGTCGCTCTCTACCAAAGCACCATAGAGGAGGCTGAGCTTATATATATATATATATCTCCTACGAATTCTGTGCTTTCTGTTAACGGATCGAGCCATTGTCTTCGTGGAATTTTCAGGCTGATTATGTAAGAGTAAAACTTGTATATAATGTGATCTTTAAGTTAGGGACGAGGGATGGCCTAGTGGTAGGTAAGGTCCCACCCATCCTCAAGGGGATGGGTTCGAGTCCCACTAGGAGAAAGTGTGGAAACACTATTGATAAAAAAAAATGTGATCCTTAAGTTGTTTCACGTGTTTTTGGATTTTGGTTCTAAGTTTATAGTTTCGACCTCCAGCTTAA

Network for GWHGAAZE011774

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02574.17	S-methyl_trans	24	332	3.30E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00547	mmuM, BHMT2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009086	biological_process	methionine biosynthetic process
GO:0008270	molecular_function	zinc ion binding
GO:0047150	molecular_function	betaine-homocysteine S-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.796
	SRR3591706	second leaf	5.762
	SRR3591707	mature leaf	26.776
	SRR3591708	Shoot apex	8.483
	SRR3591709	Stem	47.597
	SRR3591710	White floral bud	9.025
	SRR3591711	White flower	20.056
	SRR3591712	Green floral bud	10.542
	SRR3591713	Yellow flower	55.704
SRP173429	SRR8316895	Juvenile bud stage	11.917
	SRR8316896	Juvenile bud stage	10.535
	SRR8316897	Juvenile bud stage	2.859
	SRR8316894	Third green stage	4.312
	SRR8316900	Third green stage	17.391
	SRR8316901	Third green stage	8.109
	SRR8316898	Complete white stage	2.384
	SRR8316899	Complete white stage	37.481
	SRR8316903	Complete white stage	4.774
	SRR8316902	Silver flowering stage	1.984
	SRR8316904	Silver flowering stage	3.530
	SRR8316905	Silver flowering stage	1.042
	SRR8316906	Gold flowering stage	9.368
	SRR8316907	Gold flowering stage	21.595
	SRR8316908	Gold flowering stage	9.278
SRP132670	SRR6706286	Control	27.799
	SRR6706287	Light intensity 50%	15.457
	SRR6706288	Light intensity 20%	14.850
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.059
	CNS0095593	Slightly white alabastrum(diploid) 2	16.273
	CNS0095594	Slightly white alabastrum(diploid) 3	10.044
	CNS0095595	Whole white alabastrum(diploid) 2	10.876
	CNS0095596	Whole white alabastrum(diploid) 3	6.346
	CNS0095597	Whole white alabastrum(diploid) 4	7.409
	CNS0095598	Silvery flower (diploied) 1	33.753
	CNS0095599	Silvery flower (diploied) 2	15.816
	CNS0095600	Silvery flower (diploied) 3	34.712
	CNS0095601	Golden flower (diploid) 1	29.426
	CNS0095602	Golden flower (diploid) 2	128.278
	CNS0095603	Golden flower (diploid) 3	127.602
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.248
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.312
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.411
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.565
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.690
	CNS0095610	Silvery flower (tetraploid) 1	21.985
	CNS0095611	Silvery flower (tetraploid) 2	40.410
	CNS0095612	Silvery flower (tetraploid) 3	6.567
	CNS0095613	Golden flower (tetraploid) 1	19.887
	CNS0095614	Golden flower (tetraploid) 2	18.735
	CNS0095615	Golden flower (tetraploid) 3	45.735
CRA001975	CRR073297	Stem 1	12.466
	CRR073298	Stem 2	10.496
	CRR073299	Stem 3	17.460
	CRR073300	Leaf 1	11.672
	CRR073301	Leaf 2	12.295
	CRR073302	Leaf 3	17.254
	CRR073303	Juvenile bud 1	15.162
	CRR073304	Juvenile bud 2	6.564
	CRR073305	Juvenile bud 3	50.986
	CRR073306	Third green 1	1.259
	CRR073307	Third green 2	2.008
	CRR073308	Third green 3	1.563
	CRR073309	Second white 1	3.000
	CRR073310	Second white 2	3.762
	CRR073311	Second white 3	2.375
	CRR073312	Silver flowering 1	7.461
	CRR073313	Silver flowering 2	16.258
	CRR073314	Silver flowering 3	21.419
	CRR073315	Gold flowering 1	20.849
	CRR073316	Gold flowering 2	25.646
	CRR073317	Gold flowering 3	32.816
	CRR073318	Tawny withering 1	47.330
	CRR073319	Tawny withering 2	81.023
	CRR073320	Tawny withering 3	49.869