Gene detail

Detail information of GWHGAAZE011808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007143256.1	3.1291E-137	hypothetical protein PHAVU_007G057200g [Phaseolus vulgaris]
Swissprot	tr\|Q43072\|HIS7_PEA	3E-138	Imidazoleglycerol-phosphate dehydratase
trEMBL	tr\|V7BCG1\|V7BCG1_PHAVU	1E-137	Imidazoleglycerol-phosphate dehydratase {ECO:0000256\|RuleBase:RU000598}
TAIR10	AT3G22425.2	7E-103	imidazoleglycerol-phosphate dehydratase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73543087	73546943	-
GWHAAZE00000003	mRNA	73543087	73546943	-
GWHAAZE00000003	exon	73543087	73543114	-
GWHAAZE00000003	exon	73543198	73543307	-
GWHAAZE00000003	exon	73544013	73544075	-
GWHAAZE00000003	exon	73544413	73544487	-
GWHAAZE00000003	exon	73545189	73545281	-
GWHAAZE00000003	exon	73545515	73545619	-
GWHAAZE00000003	exon	73546141	73546268	-
GWHAAZE00000003	exon	73546703	73546943	-
GWHAAZE00000003	CDS	73546703	73546943	-
GWHAAZE00000003	CDS	73546141	73546268	-
GWHAAZE00000003	CDS	73545515	73545619	-
GWHAAZE00000003	CDS	73545189	73545281	-
GWHAAZE00000003	CDS	73544413	73544487	-
GWHAAZE00000003	CDS	73544013	73544075	-
GWHAAZE00000003	CDS	73543198	73543307	-
GWHAAZE00000003	CDS	73543087	73543114	-

Transcript Sequence
>GWHTAAZE011820 ATGGAGCTCTCCGTTAGCCATTGTTTTACGAGCTATTATTCATCATCATCTCAGCTACTCAAAACTAGGGTTAGGGTTCCACATAGTTCCCTCGTATCCTTACGCTTCGAACAACCACCACTCTTGTCTACGCATCACCACAACAAATTCCATCTAACGGATGTCCGAAGAACGACCACTTGTGCCTCCATGGTCCAACACAACGACAATCCAACAACCTCCTCCTTTCAAACCGATACAGGAGGAAATCGAATAGGAGAGGTTAAAAGGGTTACAAATGAGACTAATGTGTCTGTGAAGATAAACTTGGACGGTTCAGCTGTAGCTGACAGCAGCACTGGCATTCCATTTCTCGATCACATGTTGGATCAACTTGCGTCACATGGATTATTCGACGTGCATGTTAAAGCTACTGGCGATACTCACATTGATGATCATCACACAAATGAAGATGTTGCCCTTGCCATTGGAACGGCTTTGCTGCAGGCACTTGGTGATAGAAAAGGAATTAACCGGTTTGGTGATTTCTCTGCTCCGCTTGATGAAGCATTGATACATGTTTCATTGGATTTATCTGGAAGGCCACATTTAAGTTATGATTTAAACATACCCACTGCACGAGTTGGAAATTATGACACTCAGCTGGTGGAGCATTTTTTCCAATCTTTGGTTAATACATCTGGTATGACACTTCACATCCGTCAGCTTGCTGGAGAAAATTCTCACCATATAATAGAGGCAACATTCAAGGCTTTTGCAAGAGCTCTCCGGCAAGCAACAGAATATGACCCACGCCGTCGTGGGAGTGTGCCGAGCTCAAAAGGTGTTCTGTCTCGCTCTTAA

Network for GWHGAAZE011808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00475.19	IGPD	113	256	1.70E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01693	hisB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Histidine metabolism	map00340

Gene Ontology

GO term	Ontology	Name
GO:0000105	biological_process	histidine biosynthetic process
GO:0004424	molecular_function	imidazoleglycerol-phosphate dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.470
	SRR3591706	second leaf	18.115
	SRR3591707	mature leaf	25.040
	SRR3591708	Shoot apex	31.264
	SRR3591709	Stem	24.249
	SRR3591710	White floral bud	22.442
	SRR3591711	White flower	27.139
	SRR3591712	Green floral bud	30.316
	SRR3591713	Yellow flower	25.136
SRP173429	SRR8316895	Juvenile bud stage	17.050
	SRR8316896	Juvenile bud stage	26.381
	SRR8316897	Juvenile bud stage	14.323
	SRR8316894	Third green stage	13.369
	SRR8316900	Third green stage	38.734
	SRR8316901	Third green stage	31.505
	SRR8316898	Complete white stage	13.674
	SRR8316899	Complete white stage	46.920
	SRR8316903	Complete white stage	24.443
	SRR8316902	Silver flowering stage	15.271
	SRR8316904	Silver flowering stage	25.976
	SRR8316905	Silver flowering stage	12.490
	SRR8316906	Gold flowering stage	52.528
	SRR8316907	Gold flowering stage	47.272
	SRR8316908	Gold flowering stage	55.280
SRP132670	SRR6706286	Control	41.612
	SRR6706287	Light intensity 50%	49.250
	SRR6706288	Light intensity 20%	54.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.976
	CNS0095593	Slightly white alabastrum(diploid) 2	19.371
	CNS0095594	Slightly white alabastrum(diploid) 3	20.488
	CNS0095595	Whole white alabastrum(diploid) 2	18.694
	CNS0095596	Whole white alabastrum(diploid) 3	21.496
	CNS0095597	Whole white alabastrum(diploid) 4	14.866
	CNS0095598	Silvery flower (diploied) 1	26.844
	CNS0095599	Silvery flower (diploied) 2	22.250
	CNS0095600	Silvery flower (diploied) 3	34.809
	CNS0095601	Golden flower (diploid) 1	20.974
	CNS0095602	Golden flower (diploid) 2	33.657
	CNS0095603	Golden flower (diploid) 3	33.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.961
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.624
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.250
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.968
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.635
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.861
	CNS0095610	Silvery flower (tetraploid) 1	16.674
	CNS0095611	Silvery flower (tetraploid) 2	26.964
	CNS0095612	Silvery flower (tetraploid) 3	23.251
	CNS0095613	Golden flower (tetraploid) 1	13.131
	CNS0095614	Golden flower (tetraploid) 2	19.315
	CNS0095615	Golden flower (tetraploid) 3	24.908
CRA001975	CRR073297	Stem 1	47.087
	CRR073298	Stem 2	43.019
	CRR073299	Stem 3	35.360
	CRR073300	Leaf 1	42.848
	CRR073301	Leaf 2	45.451
	CRR073302	Leaf 3	45.439
	CRR073303	Juvenile bud 1	46.947
	CRR073304	Juvenile bud 2	45.700
	CRR073305	Juvenile bud 3	39.102
	CRR073306	Third green 1	32.508
	CRR073307	Third green 2	19.392
	CRR073308	Third green 3	26.812
	CRR073309	Second white 1	53.802
	CRR073310	Second white 2	43.781
	CRR073311	Second white 3	40.531
	CRR073312	Silver flowering 1	42.335
	CRR073313	Silver flowering 2	41.661
	CRR073314	Silver flowering 3	47.106
	CRR073315	Gold flowering 1	55.241
	CRR073316	Gold flowering 2	56.653
	CRR073317	Gold flowering 3	43.849
	CRR073318	Tawny withering 1	26.295
	CRR073319	Tawny withering 2	21.273
	CRR073320	Tawny withering 3	23.643