Gene detail

Detail information of GWHGAAZE011809

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649898.1	0	PREDICTED: uncharacterized protein LOC100247619 isoform X2 [Vitis vinifera]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	3E-10	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|F6HDQ0\|F6HDQ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50421.1}
TAIR10	AT4G14920.1	0	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73550019	73561553	-
GWHAAZE00000003	mRNA	73550019	73561553	-
GWHAAZE00000003	exon	73550019	73550770	-
GWHAAZE00000003	exon	73550966	73551292	-
GWHAAZE00000003	exon	73552747	73552960	-
GWHAAZE00000003	exon	73554641	73554793	-
GWHAAZE00000003	exon	73555360	73555507	-
GWHAAZE00000003	exon	73555977	73556209	-
GWHAAZE00000003	exon	73557651	73557733	-
GWHAAZE00000003	exon	73557858	73557990	-
GWHAAZE00000003	exon	73559589	73561553	-
GWHAAZE00000003	CDS	73559589	73561553	-
GWHAAZE00000003	CDS	73557858	73557990	-
GWHAAZE00000003	CDS	73557651	73557733	-
GWHAAZE00000003	CDS	73555977	73556209	-
GWHAAZE00000003	CDS	73555360	73555507	-
GWHAAZE00000003	CDS	73554641	73554793	-
GWHAAZE00000003	CDS	73552747	73552960	-
GWHAAZE00000003	CDS	73550966	73551292	-
GWHAAZE00000003	CDS	73550019	73550770	-

Transcript Sequence
>GWHTAAZE011821 ATGCATGACATGGAAGAGGGTGTGGAATCTGCAGAACAACCTTCAGGGGGTGTAGTGAAGAAGAAGAGCTCTTCTGGTTTTTTGATTATCAAAAAGAAAGGGGATGGGATCGGAGGGTTTGGTGCTTCAACTTCAAAGAAGGGAATTGAGTTGAAGAAGGAGAAGAAGAGGGCCCGTTTGATTCTCAGCGATTCGGGGTCGAGTGATGAGTTAGATTCTCCTCCGAGGAGGAAAGTTTCTTCGAAAACCGATAAAATTGGTAACGGTTTGGTTGTTAAGAAGGAGGGGTTTGGCAAAGATAGCAGTTTTAGTAAGAAAGAAGTTAAAATTGAGAGTGATAGAAAGAGAAGTGGGTTGGATGTGTTTGAATTTGATGAATATGAAAAATATGATGTGAAGAAGCTGAGGAAAGATTATGGAGATGATAGAGTGGGGCAAAGTGGGAACAAGAGGGAATCTGGAATTGGCTCAAGTAGAAATGTCAAAATTGACAAGATAAAGCATTCTTATGTTGACGGTAGAAGCAGCATAAGTGGAAAGAGTAAGGGGCCTATTTACACTAAGATGAGGCATAAGGAGGAGGATGATGAAACCCATTTAACCATTTCATCGTTGAGAGAGAAGTACCGGGAGGCTTGTGACGAGCCTATTAGGTTGCAGGGGAGAAATGGCGTGTTGAAGGTAATGGTGAATAAACAGAAAAAACCGGGTTCATCTCAAAAAAGTTACAGTCGCCATGAAGGTGAAGATAGAAAGGGTTCTAGGTCTGAAAACACTGTCAAGAAGAGCGAAGTCGTCCGACCTTCGTCTCTTTCAGACTCTAAACGGACTGAAAAACGAGTTTCATTTGTGAAGACAGAGAAAATTGAGCTGAAATCGCAAAAATCAATGTCAACTACGAGCAACAAGGCTAGAGATTCCGAAAAGGTTGGTACTGATAAGCCAAAGAAGCAAGTTTGTAGCTCAACTAAAAGAGTTAAAAAAGAAGGTAAAACTACCCCACCAACTGAAAAGATTTCTCCGGTTAAGCTTGGTACTGGCACTGAAAAGCAATTACTAAGGGAGAAGGTTAGGAGTGTGCTTCTTGATGCGGGTTGGACAATTGATTATAGACCAAGAAGGAACCGAGACTACAAAGATGCAGTCTATATTAACCCTTCCGGAACAGCATACTGGTCTATTATTAAGGCTTATGATGCATTTCAAAAGCAGTTGGAGGAAGAGGACGGAGATGGTGATATCAAACTTTCAAAGGATTCTTCTCAGTCCAGTCCTTTACCCGCTGAGATACTCAGTAAATTAACCAGGCAAACTCAAAAGAAGATTGAGAGGGAAATGAAAAATCATGAAGAGAAACTTAGTTTTTATATGAAGCAAAATCACAAGTCAAAGAAAGGAAGATTTCGTGTGAGTGAAGATGGTAGAGTCGAAAAATCATCGGATAAAACTAATTCAATAAGTGGGCAAACAGGTCGATGTACTTTGTTGGTTCGTAGTTCCGAGAAGGGGTTAAATTCAGAAGATGATGACTTTGTTCCGTATATGGGAAAGCGAACCATTTTGGCCTGGCTGATTGACTCTGAGATAGTCCGCATGAGTGAGAAAGTGCAGTATATGAACCATAGAAAGACAAGGGTAATGCTAGAGGGTTGGATCACTAGAGATGGGATCCATTGTGGTTGTTGTAGCAAAATTCTTATGGTTTCGAAGTTTGAGATTCATGCTGGAAGCAAACAGAAACAGCCATTTTCAAACATATTTGTGGAGTCTGGGCTTTCACTTTTGCAGTGCCAGATAGAAGCATGGAATAAACAAGAGGAGTCTAAACGTGAGGATTTTCACAGTGTGGATGTTGATGGTGATGATCCTAATGATGATACCTGTGGTCTCTGTGGTGATGGTGGTGATTTGATCTGTTGTGATGGTTGTCCATCGACATTTCATCAGAGCTGTTTGGATATAAAGATGCTGCCCCCAGGTGATTGGCACTGTCCAAATTGTACGTGCAAATTTTGCGGGATTGGTGGTGGGACTACTTCTGAAGCCGATTGTACAACTGTCAGTGTGCTATTCACATGCGGCCTTTGTGAGAAGAAATATCATGAATCATGCAGTGGGGAGATTGATGAACCACCCAATTCTGATAATGCAACTACTTTCTGTGGACAGACATGCCAAGAGCTATTTGGTCAACTGAGGAAGCTTGTTGGGGTGAAGCATGAATTGGAAGAAGGATATTCATGGTCACTTATTCAGAGAATGAATCCATCATCCTCAGATACTGTGCAACCTCAAAGGGTGGAATGCAATTCAAAGCTAGCTGTTGCACTTTCTATCATGGACGAGTGTTTTTTGCCAATTGTTGACAGGAGGAGTGATATCAACTTAATTCATAGCGTTCTCTATAATTGTGGGTCAAACTTCGACCGGTTGAACTACAGCGGCTTCTATACAGCTATTTTGGAGAGGGGTGATGAAATTGTATCTGCAGCATCGATCAGGTATAATAGTCAGATTTGTTGCAGATTCGAACTTTATATTTTTAAAATTAATAAACTAAAGGGAATTGTCTTTCATACATATTTTCTGAGCACTTTATATGTAAATCTATTTAGGATCCGTGGGACCCAACTAGCAGAAATGCCATTTATTGGGACTCGTCATATATATAGACGAAGAGGGATGTGTCGACGGCTTTTTGGTGCAATTGAATCGGTCCTTTGCTCTCTTAAAGTTGAGAAATTGATTATTCCAGCTGTCACTGAACACATGCAGATGTGGTCTGAAGTTTTTAACTTCAACCCACTTGAGGAATTGCACAAACAAGAAATGAGGTCCATCAATACGCTGGTGTTTCCCGGTATAGATATGTTACAGAAGCAGCTAATAAAGCCAGCTATAGCTGAGGGAAACACAAATTCAAATTCAGATATGAAGGCCGCTGCTGTGAAGGAAAATCTCCCTCTGTTGCCTGTCACGGGAAAAGATATTGAACTCGATACCTCTGATGGGAATGAATTCCAACACTGTGATGAGGCCGGAGTGCAGGAAGTGAATGAAATGGATGACAAACTTGATGCTACAGAGACCATTTTGCAAGTGCCATCTGTTCCTCAGAATGATGATAATATGAATTGTAGTTCCACAGATTCTCCTTGTGAACCTAAACTCCGGGTCTGTAGCAAGGAGACTATTCCAATTAATGCTCAGTCAGAGTCCACCATTGACTTGAAATGGCCCCCACAGGCCGATGCAATTGAGGTGAGAACAAAATTGCCTGTGGCTGTGGAAGGTGCTTCTGAGGCAGAAATTGGGCCTAAAGAGGGTAATATTTGGTCCGACTCAGAAGGTTCAAAAAGAGATGTTTGTGAAGTGGGCATTGAAGTTGCTTGTGTTGAAACTGTTCCCAATTCACCACTTCAAATTTCTGCACCAAATACTACAGAAAATGTTTACAAAAACCAGAGTGCCTTTTATTTGCCAAAAGGTACAGCAGAGCCCGATCAGCCTATATTAGATAGTGACAATCATGAAGTTGCTGCTGGTGAGTCTGAACAGAACACTGTTTATGAAACGTCTGATGATTGTAATCCTGTTTCTGCTTCTATCCTTTGTGGAACTGATGAGGGTACCGCACAATTGAGCTCAGATTTGAATAATGTGAGAGTACATGAGGTGGATTGCAAAGTACCCATGGTTCCGGAATGTGGGTCCACCACAAAAGTTTCAAAAGTGCAAAGTAATATTCAGTTGGAAGATAGTCATGAAGTAAATGCCAAAGTTGTGAGTATCATGACTGAGGTTTCTATAAACGATACTGCTGATGAAATGGTTGAGAATCTGACTCCTACTAAAGAAGTCCATGAAAATTTGGCCGAGTCAAGTTCTCACGGTTCTGGTTATAGCACGGTGCAAACTAAATCTGTTTCAGACCGTCAAAGCGCAGTTGAGACAGGAGGTGAAGTGCATATGGCTGTAGAAGTTGCTTCAAGTAATGGAGTTCATTGA

Network for GWHGAAZE011809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16135.6	TDBD	550	601	1.40E-20
PF00628.30	PHD	628	670	1.10E-07

Protein Sequence

>GWHPAAZE011815
MHDMEEGVESAEQPSGGVVKKKSSSGFLIIKKKGDGIGGFGASTSKKGIELKKEKKRARLILSDSGSSDELDSPPRRKVSSKTDKIGNGLVVKKEGFGKDSSFSKKEVKIESDRKRSGLDVFEFDEYEKYDVKKLRKDYGDDRVGQSGNKRESGIGSSRNVKIDKIKHSYVDGRSSISGKSKGPIYTKMRHKEEDDETHLTISSLREKYREACDEPIRLQGRNGVLKVMVNKQKKPGSSQKSYSRHEGEDRKGSRSENTVKKSEVVRPSSLSDSKRTEKRVSFVKTEKIELKSQKSMSTTSNKARDSEKVGTDKPKKQVCSSTKRVKKEGKTTPPTEKISPVKLGTGTEKQLLREKVRSVLLDAGWTIDYRPRRNRDYKDAVYINPSGTAYWSIIKAYDAFQKQLEEEDGDGDIKLSKDSSQSSPLPAEILSKLTRQTQKKIEREMKNHEEKLSFYMKQNHKSKKGRFRVSEDGRVEKSSDKTNSISGQTGRCTLLVRSSEKGLNSEDDDFVPYMGKRTILAWLIDSEIVRMSEKVQYMNHRKTRVMLEGWITRDGIHCGCCSKILMVSKFEIHAGSKQKQPFSNIFVESGLSLLQCQIEAWNKQEESKREDFHSVDVDGDDPNDDTCGLCGDGGDLICCDGCPSTFHQSCLDIKMLPPGDWHCPNCTCKFCGIGGGTTSEADCTTVSVLFTCGLCEKKYHESCSGEIDEPPNSDNATTFCGQTCQELFGQLRKLVGVKHELEEGYSWSLIQRMNPSSSDTVQPQRVECNSKLAVALSIMDECFLPIVDRRSDINLIHSVLYNCGSNFDRLNYSGFYTAILERGDEIVSAASIRYNSQICCRFELYIFKINKLKGIVFHTYFLSTLYVNLFRIRGTQLAEMPFIGTRHIYRRRGMCRRLFGAIESVLCSLKVEKLIIPAVTEHMQMWSEVFNFNPLEELHKQEMRSINTLVFPGIDMLQKQLIKPAIAEGNTNSNSDMKAAAVKENLPLLPVTGKDIELDTSDGNEFQHCDEAGVQEVNEMDDKLDATETILQVPSVPQNDDNMNCSSTDSPCEPKLRVCSKETIPINAQSESTIDLKWPPQADAIEVRTKLPVAVEGASEAEIGPKEGNIWSDSEGSKRDVCEVGIEVACVETVPNSPLQISAPNTTENVYKNQSAFYLPKGTAEPDQPILDSDNHEVAAGESEQNTVYETSDDCNPVSASILCGTDEGTAQLSSDLNNVRVHEVDCKVPMVPECGSTTKVSKVQSNIQLEDSHEVNAKVVSIMTEVSINDTADEMVENLTPTKEVHENLAESSSHGSGYSTVQTKSVSDRQSAVETGGEVHMAVEVASSNGVH

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.308
	SRR3591706	second leaf	7.719
	SRR3591707	mature leaf	13.956
	SRR3591708	Shoot apex	8.894
	SRR3591709	Stem	12.322
	SRR3591710	White floral bud	15.685
	SRR3591711	White flower	20.125
	SRR3591712	Green floral bud	11.283
	SRR3591713	Yellow flower	16.356
SRP173429	SRR8316895	Juvenile bud stage	5.807
	SRR8316896	Juvenile bud stage	8.773
	SRR8316897	Juvenile bud stage	3.820
	SRR8316894	Third green stage	4.459
	SRR8316900	Third green stage	9.479
	SRR8316901	Third green stage	9.169
	SRR8316898	Complete white stage	4.402
	SRR8316899	Complete white stage	9.567
	SRR8316903	Complete white stage	12.482
	SRR8316902	Silver flowering stage	6.235
	SRR8316904	Silver flowering stage	12.047
	SRR8316905	Silver flowering stage	5.712
	SRR8316906	Gold flowering stage	16.141
	SRR8316907	Gold flowering stage	16.660
	SRR8316908	Gold flowering stage	17.686
SRP132670	SRR6706286	Control	6.782
	SRR6706287	Light intensity 50%	7.288
	SRR6706288	Light intensity 20%	8.217
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.729
	CNS0095593	Slightly white alabastrum(diploid) 2	3.287
	CNS0095594	Slightly white alabastrum(diploid) 3	4.404
	CNS0095595	Whole white alabastrum(diploid) 2	4.158
	CNS0095596	Whole white alabastrum(diploid) 3	3.374
	CNS0095597	Whole white alabastrum(diploid) 4	4.510
	CNS0095598	Silvery flower (diploied) 1	8.272
	CNS0095599	Silvery flower (diploied) 2	6.683
	CNS0095600	Silvery flower (diploied) 3	17.811
	CNS0095601	Golden flower (diploid) 1	6.162
	CNS0095602	Golden flower (diploid) 2	17.985
	CNS0095603	Golden flower (diploid) 3	17.939
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.123
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.865
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.705
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.151
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.281
	CNS0095610	Silvery flower (tetraploid) 1	19.192
	CNS0095611	Silvery flower (tetraploid) 2	16.709
	CNS0095612	Silvery flower (tetraploid) 3	19.632
	CNS0095613	Golden flower (tetraploid) 1	8.885
	CNS0095614	Golden flower (tetraploid) 2	14.952
	CNS0095615	Golden flower (tetraploid) 3	25.689
CRA001975	CRR073297	Stem 1	9.047
	CRR073298	Stem 2	7.995
	CRR073299	Stem 3	5.570
	CRR073300	Leaf 1	9.173
	CRR073301	Leaf 2	6.973
	CRR073302	Leaf 3	5.657
	CRR073303	Juvenile bud 1	5.278
	CRR073304	Juvenile bud 2	5.952
	CRR073305	Juvenile bud 3	7.910
	CRR073306	Third green 1	5.583
	CRR073307	Third green 2	3.957
	CRR073308	Third green 3	6.604
	CRR073309	Second white 1	3.878
	CRR073310	Second white 2	9.120
	CRR073311	Second white 3	9.401
	CRR073312	Silver flowering 1	6.307
	CRR073313	Silver flowering 2	4.970
	CRR073314	Silver flowering 3	6.484
	CRR073315	Gold flowering 1	2.761
	CRR073316	Gold flowering 2	7.936
	CRR073317	Gold flowering 3	2.480
	CRR073318	Tawny withering 1	5.117
	CRR073319	Tawny withering 2	4.659
	CRR073320	Tawny withering 3	4.001