Gene detail

Detail information of GWHGAAZE011817

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010256021.1	2.4234E-155	PREDICTED: probable tubulin--tyrosine ligase PBY1 isoform X2 [Nelumbo nucifera]
trEMBL	tr\|U7DYF4\|U7DYF4_POPTR	1E-154	Uncharacterized protein {ECO:0000313\|EMBL:ERP46588.1}
TAIR10	AT4G14930.1	4E-110	Survival protein SurE-like phosphatase/nucleotidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73681212	73693534	+
GWHAAZE00000003	mRNA	73681212	73693534	+
GWHAAZE00000003	exon	73681212	73681354	+
GWHAAZE00000003	exon	73683112	73683206	+
GWHAAZE00000003	exon	73685346	73685410	+
GWHAAZE00000003	exon	73686378	73686421	+
GWHAAZE00000003	exon	73687223	73687300	+
GWHAAZE00000003	exon	73690342	73690495	+
GWHAAZE00000003	exon	73691952	73692128	+
GWHAAZE00000003	exon	73693424	73693534	+
GWHAAZE00000003	CDS	73681212	73681354	+
GWHAAZE00000003	CDS	73683112	73683206	+
GWHAAZE00000003	CDS	73685346	73685410	+
GWHAAZE00000003	CDS	73686378	73686421	+
GWHAAZE00000003	CDS	73687223	73687300	+
GWHAAZE00000003	CDS	73690342	73690495	+
GWHAAZE00000003	CDS	73691952	73692128	+
GWHAAZE00000003	CDS	73693424	73693534	+

Transcript Sequence
>GWHTAAZE011829 ATGGAGAATAACGATAATTCGGGTAACCGACCGGCGATCATGGTGACAAACGACGATGGAGTCGATGCTCCAGGTTTGCAAGCTCTGGTTCACGTTCTCGTCTCCACCAACCTTTACCACGTTTTGGTCTGCGCCCCTGATTCGGAAAAATCGGCTGTTAGTCATAGTATCACTTGGCGTCATGCTCTTTCTGTCAAGCGAGTGGAAATTAATGGAGCAACAGCCTTTGCAGTTTCTGGAACTCCGGCCGACTGTACTTCTTTGGGAATCTCCAAAGCACTCTTTCCTTTAGTGCCGGATTTGGTTATCAGTGGCATTAACATGGGTAGCAACTGTGGTTATCACATTGTGTACTCAGGGACTGTTGCAGGTGCTCGAGAGGCCTTTTTCCAGGGCGTACCTTCTCTCTCTGTATCATATGATTGGGTTGGAGGTAAAAGCAATACCAATGATTTCACGCTGTCTGCTGAGGCTTGCTTACCCATCATAAGCGCAATTTTGGCCGAGATCAAGAATAAAACTTATCCCCAAAGATGTTTCCTCAATATAGATCTTCCCACAAATGTTTCAAATCACAAGGGATATAAGTTGACTAAGCAGGGCAAGAGTATTGTTAAAATGGGGTGGAATCAAGTTACTTCTGATGTGCAAGGAGGTAAAATGTTATCAACGATGACAATGGAAACAAATTCTTTAGCATCCTCAGACACGAATTCTTCAACTCTATCCCAAGAAAATCTTTTGTTCAAGAGAGAAATAACTGTTAGTCCTATTGGCGCATTATCTCATGCAGAGACAGATTGTGAGGCATACTTCAAAGAATGGCTGCCAAATGTGGCTGGGCACTCTGCTTCTTCAGCCCTATGA

Network for GWHGAAZE011817

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01975.18	SurE	13	203	4.50E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03787	surE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity
GO:0008252	molecular_function	nucleotidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.592
	SRR3591706	second leaf	19.196
	SRR3591707	mature leaf	8.703
	SRR3591708	Shoot apex	23.196
	SRR3591709	Stem	23.546
	SRR3591710	White floral bud	50.406
	SRR3591711	White flower	48.553
	SRR3591712	Green floral bud	58.903
	SRR3591713	Yellow flower	62.859
SRP173429	SRR8316895	Juvenile bud stage	24.241
	SRR8316896	Juvenile bud stage	41.838
	SRR8316897	Juvenile bud stage	20.886
	SRR8316894	Third green stage	19.393
	SRR8316900	Third green stage	66.893
	SRR8316901	Third green stage	61.232
	SRR8316898	Complete white stage	34.589
	SRR8316899	Complete white stage	58.953
	SRR8316903	Complete white stage	39.949
	SRR8316902	Silver flowering stage	35.452
	SRR8316904	Silver flowering stage	41.203
	SRR8316905	Silver flowering stage	16.856
	SRR8316906	Gold flowering stage	89.002
	SRR8316907	Gold flowering stage	92.283
	SRR8316908	Gold flowering stage	83.286
SRP132670	SRR6706286	Control	50.404
	SRR6706287	Light intensity 50%	51.963
	SRR6706288	Light intensity 20%	56.984
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.308
	CNS0095593	Slightly white alabastrum(diploid) 2	33.239
	CNS0095594	Slightly white alabastrum(diploid) 3	40.646
	CNS0095595	Whole white alabastrum(diploid) 2	51.605
	CNS0095596	Whole white alabastrum(diploid) 3	57.828
	CNS0095597	Whole white alabastrum(diploid) 4	54.397
	CNS0095598	Silvery flower (diploied) 1	19.252
	CNS0095599	Silvery flower (diploied) 2	25.423
	CNS0095600	Silvery flower (diploied) 3	46.942
	CNS0095601	Golden flower (diploid) 1	24.243
	CNS0095602	Golden flower (diploid) 2	44.589
	CNS0095603	Golden flower (diploid) 3	46.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.497
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.441
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.850
	CNS0095607	Whole white alabastrum(tetraploid) 1	70.871
	CNS0095608	Whole white alabastrum(tetraploid) 2	82.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.916
	CNS0095610	Silvery flower (tetraploid) 1	48.216
	CNS0095611	Silvery flower (tetraploid) 2	46.547
	CNS0095612	Silvery flower (tetraploid) 3	75.198
	CNS0095613	Golden flower (tetraploid) 1	28.942
	CNS0095614	Golden flower (tetraploid) 2	47.877
	CNS0095615	Golden flower (tetraploid) 3	67.026
CRA001975	CRR073297	Stem 1	27.135
	CRR073298	Stem 2	30.132
	CRR073299	Stem 3	26.247
	CRR073300	Leaf 1	48.566
	CRR073301	Leaf 2	44.064
	CRR073302	Leaf 3	46.628
	CRR073303	Juvenile bud 1	42.264
	CRR073304	Juvenile bud 2	47.998
	CRR073305	Juvenile bud 3	24.684
	CRR073306	Third green 1	59.148
	CRR073307	Third green 2	54.573
	CRR073308	Third green 3	46.478
	CRR073309	Second white 1	55.884
	CRR073310	Second white 2	63.789
	CRR073311	Second white 3	55.249
	CRR073312	Silver flowering 1	54.766
	CRR073313	Silver flowering 2	41.023
	CRR073314	Silver flowering 3	48.163
	CRR073315	Gold flowering 1	14.003
	CRR073316	Gold flowering 2	11.147
	CRR073317	Gold flowering 3	14.257
	CRR073318	Tawny withering 1	24.876
	CRR073319	Tawny withering 2	20.497
	CRR073320	Tawny withering 3	22.097