Gene detail

Detail information of GWHGAAZE011827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007225123.1	0	hypothetical protein PRUPE_ppa002675mg [Prunus persica]
Swissprot	tr\|Q43077\|AMO_PEA	1E-165	Primary amine oxidase (Precursor)
trEMBL	tr\|M5XJS2\|M5XJS2_PRUPE	0	Amine oxidase {ECO:0000256\|RuleBase:RU000672}
TAIR10	AT4G14940.1	6E-172	amine oxidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73795979	73798099	+
GWHAAZE00000003	mRNA	73795979	73798099	+
GWHAAZE00000003	exon	73795979	73796801	+
GWHAAZE00000003	exon	73796908	73797104	+
GWHAAZE00000003	exon	73797311	73797424	+
GWHAAZE00000003	exon	73797596	73798099	+
GWHAAZE00000003	CDS	73795979	73796801	+
GWHAAZE00000003	CDS	73796908	73797104	+
GWHAAZE00000003	CDS	73797311	73797424	+
GWHAAZE00000003	CDS	73797596	73798099	+

Transcript Sequence
>GWHTAAZE011839 ATGACCATACCATTCCTAGCTTTAGCTCTTGCACTCCAATTTCTCTTACCCACTACTCTACCTCACCCCTTGGACCCTCTAAATCCCTCTGAAATTAACCAAATTACGCAAATTATTCAAAAATCCCACACTGGTACCCTGCCTAATTTGGTCTACCATTTTCTTGATCTTGAAGAGCCAGAGAAAAATGATGTTATCAAGTGGCTATCTTCAAAGAACTACAATGGGTCCTTCCCCTATCGTCGAGCCAAGGCCGTGGTTCGAGGTAGGGGCCAGACTCATGAGCTTGTTGTGGACTTAGCCACGAATTCGGTCACATCAGACCACATTTACACAGGTCACGGTTACCCTCCATCCACATTTTCCGAATTTATCAGAGCGGGCCGACTTGCCTTGAGGGATCCAAGGTTCCAAGCCTCGGTCTCTAAACGAGGCCTAAATTTGTCCGAAGTTACTTGTTTACCCTTTACAATGGGTTGGTTTGGAGAAAATAACCTGAAAAGGGCCGTTAGAGTTTCATGTTTTTACCGTGGAGGTACTACTAATGTTTTCTCAAGGCCTATTCAAGGGATCATTATAATAGTCGATATCGAATCAATGCAAATTTCTAAATACATCGATAAATATAGAGCCACATTGCCACGAGCCAAAGGTACTGATTTTCAATCATCAAGCCAAAATCCTAATTCAATCACCCCTTGCAACGAAACAAACACCGGCTTCACTATCAAAGGCCACAATGTTCAATGGGAAAATTGGGAATTTCATGTTGGATTCAACGCCCGGGCCGGGGTAATTATATCAACAGCATCTATAGTTGATGGTGAGTTTGGGTTCGGCCGGTCCACTAGCAGCCTCGTTCCGCTGACCGACTGTCCCGGGAATGCTAAGTATATCGACGGATATATGGTGGGATCCGATGGGCACGCCCAAGAGGTCCCTAATGCGATCTGCATTTTCGAGCGTTATAGTGGTGATATTGCTTGGAGACATACTGAAGTTGGTGTCCCCGGAAAAGTGATAACGAGTGGACAGAGGGAAGTAAATTTGGTGGTTAGAATGGTGGCTACGGTTGGGAATTATGATTATATTCTTGATTGGGAGTTCAAGCAAAGTGGCTCCATCAAAGTTGGGGTAGGCCTGACAGGTGTACTAGAGGTGAAGGCCACGTCATACACAAACACAGATCAGATAACTAAGGACGTGTTTGGCACCCTAGTAGCAGATAACACAATTGGGGATAACCATGACCACTTCCTAACTTACTATCTTGACCTTGATATTGATGGAAATTACAATTCATTCACCAAGTCTAAGTTGGAAACGGCAAGAGTAACGGACGTTAACTCTTCTCCAAGGAAGAGTTATTGGAGGGTCGTTAAAGAAACGGCTAAAACTGAAGCCGAGGCTCGGATCCGGCTTGGCTCAGAGCCGGCTCAACTGTTTTTAGTGAACCCGAATAAGAAGACGAGTTTGGGAAATCACGTGGGTTATCGATTGGTTACTGGTGAGACAGCTTCGTCTTTATTATCTGATGATGATTATCCGCAAATTCGTGCTTCTTATAGTAAATATCAAGTGTGGGTGACTAGATATAACAAGTCGAACGATGGGCCGGTGGGTTTTATGCCGATATGA

Network for GWHGAAZE011827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02727.17	Cu_amine_oxidN2	22	110	2.80E-22
PF02728.17	Cu_amine_oxidN3	117	209	3.90E-20
PF01179.21	Cu_amine_oxid	239	272	2.40E-06
PF01179.21	Cu_amine_oxid	274	537	2.50E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00276	AOC3, AOC2, tynA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycine, serine and threonine metabolism	map00260
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		beta-Alanine metabolism	map00410
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0009308	biological_process	amine metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0008131	molecular_function	primary amine oxidase activity
GO:0048038	molecular_function	quinone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.148
	SRR3591706	second leaf	1.382
	SRR3591707	mature leaf	0.287
	SRR3591708	Shoot apex	0.663
	SRR3591709	Stem	0.853
	SRR3591710	White floral bud	0.082
	SRR3591711	White flower	0.176
	SRR3591712	Green floral bud	0.307
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.674
	SRR8316896	Juvenile bud stage	0.689
	SRR8316897	Juvenile bud stage	0.152
	SRR8316894	Third green stage	0.130
	SRR8316900	Third green stage	0.408
	SRR8316901	Third green stage	0.704
	SRR8316898	Complete white stage	0.026
	SRR8316899	Complete white stage	0.197
	SRR8316903	Complete white stage	0.196
	SRR8316902	Silver flowering stage	0.090
	SRR8316904	Silver flowering stage	0.069
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.180
	SRR6706287	Light intensity 50%	0.269
	SRR6706288	Light intensity 20%	0.164
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.335
	CNS0095593	Slightly white alabastrum(diploid) 2	0.899
	CNS0095594	Slightly white alabastrum(diploid) 3	0.293
	CNS0095595	Whole white alabastrum(diploid) 2	0.144
	CNS0095596	Whole white alabastrum(diploid) 3	0.755
	CNS0095597	Whole white alabastrum(diploid) 4	0.193
	CNS0095598	Silvery flower (diploied) 1	0.268
	CNS0095599	Silvery flower (diploied) 2	0.069
	CNS0095600	Silvery flower (diploied) 3	0.119
	CNS0095601	Golden flower (diploid) 1	0.136
	CNS0095602	Golden flower (diploid) 2	0.086
	CNS0095603	Golden flower (diploid) 3	0.221
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.397
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.349
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.174
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.256
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.021
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.152
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	0.545
	CRR073298	Stem 2	0.714
	CRR073299	Stem 3	2.083
	CRR073300	Leaf 1	0.478
	CRR073301	Leaf 2	0.724
	CRR073302	Leaf 3	1.479
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.141
	CRR073305	Juvenile bud 3	0.385
	CRR073306	Third green 1	0.633
	CRR073307	Third green 2	0.182
	CRR073308	Third green 3	0.250
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.030
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.290
	CRR073316	Gold flowering 2	0.741
	CRR073317	Gold flowering 3	0.661
	CRR073318	Tawny withering 1	3.659
	CRR073319	Tawny withering 2	1.427
	CRR073320	Tawny withering 3	5.000