Detail information of GWHGAAZE011830


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU45646.10hypothetical protein MIMGU_mgv1a006701mg [Erythranthe guttata]
Swissprottr|Q5XF36|KMS1_ARATH0Vacuole membrane protein KMS1 {ECO:0000303|PubMed:21294794}
trEMBLtr|A0A022S071|A0A022S071_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU45646.1}
TAIR10AT4G14950.32E-171SNARE associated Golgi protein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7385721373864154+
GWHAAZE00000003mRNA7385721373864154+
GWHAAZE00000003exon7385721373857440+
GWHAAZE00000003exon7385884673858924+
GWHAAZE00000003exon7386016073860459+
GWHAAZE00000003exon7386140473861561+
GWHAAZE00000003exon7386252373862639+
GWHAAZE00000003exon7386272873862904+
GWHAAZE00000003exon7386397873864154+
GWHAAZE00000003CDS7385721373857440+
GWHAAZE00000003CDS7385884673858924+
GWHAAZE00000003CDS7386016073860459+
GWHAAZE00000003CDS7386140473861561+
GWHAAZE00000003CDS7386252373862639+
GWHAAZE00000003CDS7386272873862904+
GWHAAZE00000003CDS7386397873864154+
Transcript Sequence

Network for GWHGAAZE011830

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09335.12SNARE_assoc1872888.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K21248VMP1 Autophagy - animal map04140

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.929
SRR3591706second leaf9.036
SRR3591707mature leaf10.830
SRR3591708Shoot apex19.459
SRR3591709Stem30.815
SRR3591710White floral bud15.693
SRR3591711White flower20.883
SRR3591712Green floral bud15.279
SRR3591713Yellow flower8.649
SRP173429 SRR8316895Juvenile bud stage 12.342
SRR8316896Juvenile bud stage 12.557
SRR8316897Juvenile bud stage 5.408
SRR8316894Third green stage 5.153
SRR8316900Third green stage 16.038
SRR8316901Third green stage 16.664
SRR8316898Complete white stage 4.804
SRR8316899Complete white stage 50.538
SRR8316903Complete white stage 10.457
SRR8316902Silver flowering stage5.356
SRR8316904Silver flowering stage7.095
SRR8316905Silver flowering stage2.588
SRR8316906Gold flowering stage 11.334
SRR8316907Gold flowering stage 10.270
SRR8316908Gold flowering stage 7.654
SRP132670SRR6706286Control14.840
SRR6706287Light intensity 50%12.832
SRR6706288Light intensity 20%14.660
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.771
CNS0095593Slightly white alabastrum(diploid) 217.323
CNS0095594Slightly white alabastrum(diploid) 313.106
CNS0095595Whole white alabastrum(diploid) 214.176
CNS0095596Whole white alabastrum(diploid) 312.554
CNS0095597Whole white alabastrum(diploid) 413.713
CNS0095598Silvery flower (diploied) 113.309
CNS0095599Silvery flower (diploied) 211.964
CNS0095600Silvery flower (diploied) 315.901
CNS0095601Golden flower (diploid) 116.001
CNS0095602Golden flower (diploid) 217.347
CNS0095603Golden flower (diploid) 318.399
CNS0095604Slightly white alabastrum(tetraploid) 110.363
CNS0095605Slightly white alabastrum(tetraploid) 29.189
CNS0095606Slightly white alabastrum(tetraploid) 320.577
CNS0095607Whole white alabastrum(tetraploid) 19.221
CNS0095608Whole white alabastrum(tetraploid) 26.536
CNS0095609Whole white alabastrum(tetraploid) 310.400
CNS0095610Silvery flower (tetraploid) 112.249
CNS0095611Silvery flower (tetraploid) 212.718
CNS0095612Silvery flower (tetraploid) 36.717
CNS0095613Golden flower (tetraploid) 16.034
CNS0095614Golden flower (tetraploid) 29.010
CNS0095615Golden flower (tetraploid) 31.730
CRA001975CRR073297Stem 114.607
CRR073298Stem 214.708
CRR073299Stem 315.151
CRR073300Leaf 116.283
CRR073301Leaf 216.728
CRR073302Leaf 313.586
CRR073303Juvenile bud 112.259
CRR073304Juvenile bud 28.860
CRR073305Juvenile bud 314.935
CRR073306Third green 10.626
CRR073307Third green 20.755
CRR073308Third green 31.487
CRR073309Second white 10.673
CRR073310Second white 20.282
CRR073311Second white 30.596
CRR073312Silver flowering 10.463
CRR073313Silver flowering 20.524
CRR073314Silver flowering 30.601
CRR073315Gold flowering 114.656
CRR073316Gold flowering 223.753
CRR073317Gold flowering 318.453
CRR073318Tawny withering 124.537
CRR073319Tawny withering 218.697
CRR073320Tawny withering 324.807