Detail information of GWHGAAZE011847


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649878.10PREDICTED: probable ATP-dependent DNA helicase CHR12 [Vitis vinifera]
Swissprottr|F4J9M5|CHR12_ARATH0Probable ATP-dependent DNA helicase CHR12
trEMBLtr|F6HDM6|F6HDM6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50397.1}
TAIR10AT3G06010.10Homeotic gene regulator

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7409643874106682-
GWHAAZE00000003mRNA7409643874106682-
GWHAAZE00000003exon7410640074106682-
GWHAAZE00000003exon7410420974104368-
GWHAAZE00000003exon7410370174103765-
GWHAAZE00000003exon7410327874103466-
GWHAAZE00000003exon7410250274102651-
GWHAAZE00000003exon7410188874102286-
GWHAAZE00000003exon7410097874101237-
GWHAAZE00000003exon7410061874100836-
GWHAAZE00000003exon7409973074099937-
GWHAAZE00000003exon7409948874099641-
GWHAAZE00000003exon7409791874098520-
GWHAAZE00000003exon7409643874097441-
GWHAAZE00000003five_prime_UTR7410664374106682-
GWHAAZE00000003CDS7410640074106642-
GWHAAZE00000003CDS7410420974104368-
GWHAAZE00000003CDS7410370174103765-
GWHAAZE00000003CDS7410327874103466-
GWHAAZE00000003CDS7410250274102651-
GWHAAZE00000003CDS7410188874102286-
GWHAAZE00000003CDS7410097874101237-
GWHAAZE00000003CDS7410061874100836-
GWHAAZE00000003CDS7409973074099937-
GWHAAZE00000003CDS7409948874099641-
GWHAAZE00000003CDS7409791874098520-
GWHAAZE00000003CDS7409681974097441-
GWHAAZE00000003three_prime_UTR7409643874096818-
Transcript Sequence

Network for GWHGAAZE011847

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N4317061.70E-67
PF00271.32Helicase_C7258383.50E-20
PF14619.7SnAC9329952.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042393molecular_functionhistone binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.569
SRR3591706second leaf1.914
SRR3591707mature leaf2.663
SRR3591708Shoot apex3.278
SRR3591709Stem2.916
SRR3591710White floral bud4.570
SRR3591711White flower6.543
SRR3591712Green floral bud3.986
SRR3591713Yellow flower6.672
SRP173429 SRR8316895Juvenile bud stage 1.424
SRR8316896Juvenile bud stage 3.393
SRR8316897Juvenile bud stage 1.392
SRR8316894Third green stage 1.372
SRR8316900Third green stage 3.999
SRR8316901Third green stage 3.707
SRR8316898Complete white stage 1.075
SRR8316899Complete white stage 2.210
SRR8316903Complete white stage 2.270
SRR8316902Silver flowering stage1.804
SRR8316904Silver flowering stage3.679
SRR8316905Silver flowering stage1.846
SRR8316906Gold flowering stage 5.496
SRR8316907Gold flowering stage 4.748
SRR8316908Gold flowering stage 4.742
SRP132670SRR6706286Control3.637
SRR6706287Light intensity 50%3.313
SRR6706288Light intensity 20%3.087
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.544
CNS0095593Slightly white alabastrum(diploid) 22.578
CNS0095594Slightly white alabastrum(diploid) 33.510
CNS0095595Whole white alabastrum(diploid) 23.439
CNS0095596Whole white alabastrum(diploid) 33.824
CNS0095597Whole white alabastrum(diploid) 43.559
CNS0095598Silvery flower (diploied) 11.989
CNS0095599Silvery flower (diploied) 20.952
CNS0095600Silvery flower (diploied) 33.483
CNS0095601Golden flower (diploid) 11.329
CNS0095602Golden flower (diploid) 23.152
CNS0095603Golden flower (diploid) 33.148
CNS0095604Slightly white alabastrum(tetraploid) 13.837
CNS0095605Slightly white alabastrum(tetraploid) 23.878
CNS0095606Slightly white alabastrum(tetraploid) 32.008
CNS0095607Whole white alabastrum(tetraploid) 14.086
CNS0095608Whole white alabastrum(tetraploid) 24.712
CNS0095609Whole white alabastrum(tetraploid) 34.061
CNS0095610Silvery flower (tetraploid) 14.094
CNS0095611Silvery flower (tetraploid) 24.581
CNS0095612Silvery flower (tetraploid) 35.059
CNS0095613Golden flower (tetraploid) 13.688
CNS0095614Golden flower (tetraploid) 24.660
CNS0095615Golden flower (tetraploid) 35.825
CRA001975CRR073297Stem 12.873
CRR073298Stem 23.084
CRR073299Stem 30.992
CRR073300Leaf 13.201
CRR073301Leaf 22.208
CRR073302Leaf 31.518
CRR073303Juvenile bud 11.321
CRR073304Juvenile bud 20.833
CRR073305Juvenile bud 31.450
CRR073306Third green 11.387
CRR073307Third green 21.524
CRR073308Third green 31.703
CRR073309Second white 10.746
CRR073310Second white 21.825
CRR073311Second white 32.188
CRR073312Silver flowering 12.132
CRR073313Silver flowering 21.659
CRR073314Silver flowering 31.798
CRR073315Gold flowering 10.322
CRR073316Gold flowering 20.671
CRR073317Gold flowering 30.276
CRR073318Tawny withering 10.730
CRR073319Tawny withering 21.105
CRR073320Tawny withering 30.854