Gene detail

Detail information of GWHGAAZE011852

Functional Annotation

Database	Orthologs	Annotation
Nr	AFO84093.1	ADP glucose pyrophosphorylase [Actinidia chinensis]
Swissprot	tr\|P55229\|GLGL1_ARATH	Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic (Precursor)
trEMBL	tr\|S4SLL8\|S4SLL8_ACTCH	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}
TAIR10	AT5G19220.1	ADP glucose pyrophosphorylase large subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74193363	74204871	+
GWHAAZE00000003	mRNA	74193363	74204871	+
GWHAAZE00000003	exon	74193363	74193692	+
GWHAAZE00000003	exon	74193803	74193916	+
GWHAAZE00000003	exon	74194303	74194476	+
GWHAAZE00000003	exon	74194575	74194667	+
GWHAAZE00000003	exon	74195289	74195372	+
GWHAAZE00000003	exon	74195469	74195524	+
GWHAAZE00000003	exon	74195731	74195824	+
GWHAAZE00000003	exon	74195921	74196033	+
GWHAAZE00000003	exon	74196832	74196904	+
GWHAAZE00000003	exon	74197174	74197254	+
GWHAAZE00000003	exon	74198339	74198425	+
GWHAAZE00000003	exon	74204104	74204208	+
GWHAAZE00000003	exon	74204388	74204494	+
GWHAAZE00000003	exon	74204590	74204650	+
GWHAAZE00000003	exon	74204770	74204871	+
GWHAAZE00000003	CDS	74193363	74193692	+
GWHAAZE00000003	CDS	74193803	74193916	+
GWHAAZE00000003	CDS	74194303	74194476	+
GWHAAZE00000003	CDS	74194575	74194667	+
GWHAAZE00000003	CDS	74195289	74195372	+
GWHAAZE00000003	CDS	74195469	74195524	+
GWHAAZE00000003	CDS	74195731	74195824	+
GWHAAZE00000003	CDS	74195921	74196033	+
GWHAAZE00000003	CDS	74196832	74196904	+
GWHAAZE00000003	CDS	74197174	74197254	+
GWHAAZE00000003	CDS	74198339	74198425	+
GWHAAZE00000003	CDS	74204104	74204208	+
GWHAAZE00000003	CDS	74204388	74204494	+
GWHAAZE00000003	CDS	74204590	74204650	+
GWHAAZE00000003	CDS	74204770	74204871	+

Transcript Sequence
>GWHTAAZE011864 ATGACCAACGGACTCTCCTCACTTTTTCTTCTTCCTCCCAACTTTCTTTTCCATTGCTTACCCGGCCATCACATAATTCCATTTTTACCCTCAAAGTTAGGAGGAAATGGCAGTCACAGTGGACTGCCGGATCACCCCATCAAGCAAGCCAGGCAGCTACGTGGCACTGCCGATTTAGCAGGGAGGCACAAAGGAAATTTGAAGTTTTGCAATGGAGAGTTAATGGGAGAGAAGTTGAAGTTTACTCATTTTCATCAAAGTAGTAGAAGCAAGAATGTTAAATCACGTGTGCGCATGACCCTCACAACTAATGTTGCAGGTGAGGCTAAGTTGAGGGACCTTGAGATGGAAAGAAGGGACCCGAAAACAGTTGTGGCAGTAATACTGGGGGGTGGAGCCGGTACTCGTCTTTTCCCTCTCACCAAACGCCGTGCTAAACCTGCTGTACCCATCGGTGGAGCATATAGGCTGATAGATGTGCCGATGAGCAATTGCATAAACAGTGGAATCAACAAAGTTTACATTCTAACTCAGTACAACTCGGCATCACTCAACAGGCATCTCACTCGCGCCTACACTTTTGGAAATGGGGTCACATTTGGAGATGGCTATGTAGAGGCTCTTGCAGCAACTCAAACCCCAGGTGAGGCAGGTAAAAATTGGTTTCAGGGTACTGCGGATGCCGTTCGACAGTTCCATTGGCTTTTTGAGGATGCAAGAAGTAAGGACATTGAAGACGTGCTCATTCTATCAGGAGATCACTTGTACAGAATGGACTATATGGACTTTGTTCAGAATCACCGACAAAGTGGTGCAGATATCAGTATCTCTTCTTTGCCAATGGATGACAGCCGTGCATCAGATTTTGGTTTGATGAAAATCGACAATAAAGGGAGGGTAATTTCATTCAGTGAAAAGCCTAAAGGGGCTGATTTGAAGGCAATGGCAGTAGACACAACAGTTTTGGGATTGTCTAAAGAAGAGGCCGTAAAGAAGCCTTATATTGCTTCCATGGGAGTATACCTCTTCAAGAAGGAGATACTTCTAAATATTTTAAGGTGGCGCTTCCCAACTGCAAATGACTTTGGATCAGAGATTATCCCTGCCTCGGCCAAAGAATTCTTCCTAAAGGCTTACTTATTTAATGATTACTGGGAAGACATTGGTACAATCAGGTCCTTCTTTGAAGCAAACCTTGCCCTTACTGCACATCCACCAAGATTTAGTTTCTATGATGCAGCAAAGCCAATGTTTACCTCAAGAAGAAACTTACCGCCATCACAGATTGACGGTACCAAGATTGTCGATTCAATTATTTCACATGGTAGTTACCTAACAAGTTGCTTTGTAGAGCACAGTGTTGTCGGCATCCGATCCAGGATAAACTCTAATGTTCACTTAAAGGACACTGTCATGCTTGGTGCCGACTACTATGAAACTAGTGATGAAATTGAATCACTGTTGGCTGAGGGAAGAGTTCCTATTGGAATAGGAGAGAATACAAAAATAAGCGACTGCATTATTGACAAGAACGCCAGAATTGGAAAGGATGTAGTTATCGCAAACTCAGAGGGTGTACAAGAGGCTGACAGATCTTCAGAAGGATTCTACATCCGCTCAGGCATTACAGTTATACTAAAAAACTCAACGATTAACGATGGACTAAAGATATGA

Network for GWHGAAZE011852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	126	402	7.20E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00975	glgC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0005978	biological_process	glycogen biosynthetic process
GO:0016779	molecular_function	nucleotidyltransferase activity
GO:0008878	molecular_function	glucose-1-phosphate adenylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.254
	SRR3591706	second leaf	149.368
	SRR3591707	mature leaf	129.057
	SRR3591708	Shoot apex	51.583
	SRR3591709	Stem	2.222
	SRR3591710	White floral bud	3.465
	SRR3591711	White flower	1.409
	SRR3591712	Green floral bud	8.031
	SRR3591713	Yellow flower	0.114
SRP173429	SRR8316895	Juvenile bud stage	11.404
	SRR8316896	Juvenile bud stage	9.740
	SRR8316897	Juvenile bud stage	8.886
	SRR8316894	Third green stage	5.289
	SRR8316900	Third green stage	8.593
	SRR8316901	Third green stage	7.588
	SRR8316898	Complete white stage	0.900
	SRR8316899	Complete white stage	1.086
	SRR8316903	Complete white stage	0.927
	SRR8316902	Silver flowering stage	2.598
	SRR8316904	Silver flowering stage	2.164
	SRR8316905	Silver flowering stage	1.714
	SRR8316906	Gold flowering stage	1.179
	SRR8316907	Gold flowering stage	2.858
	SRR8316908	Gold flowering stage	1.547
SRP132670	SRR6706286	Control	4.125
	SRR6706287	Light intensity 50%	5.519
	SRR6706288	Light intensity 20%	4.952
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.811
	CNS0095593	Slightly white alabastrum(diploid) 2	5.305
	CNS0095594	Slightly white alabastrum(diploid) 3	6.619
	CNS0095595	Whole white alabastrum(diploid) 2	6.313
	CNS0095596	Whole white alabastrum(diploid) 3	7.982
	CNS0095597	Whole white alabastrum(diploid) 4	3.812
	CNS0095598	Silvery flower (diploied) 1	7.745
	CNS0095599	Silvery flower (diploied) 2	7.774
	CNS0095600	Silvery flower (diploied) 3	1.082
	CNS0095601	Golden flower (diploid) 1	7.232
	CNS0095602	Golden flower (diploid) 2	2.515
	CNS0095603	Golden flower (diploid) 3	2.648
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.909
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.243
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.591
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.767
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.932
	CNS0095610	Silvery flower (tetraploid) 1	1.206
	CNS0095611	Silvery flower (tetraploid) 2	2.934
	CNS0095612	Silvery flower (tetraploid) 3	0.820
	CNS0095613	Golden flower (tetraploid) 1	0.205
	CNS0095614	Golden flower (tetraploid) 2	0.703
	CNS0095615	Golden flower (tetraploid) 3	0.055
CRA001975	CRR073297	Stem 1	10.669
	CRR073298	Stem 2	7.802
	CRR073299	Stem 3	10.598
	CRR073300	Leaf 1	1.543
	CRR073301	Leaf 2	1.458
	CRR073302	Leaf 3	2.215
	CRR073303	Juvenile bud 1	0.223
	CRR073304	Juvenile bud 2	0.703
	CRR073305	Juvenile bud 3	0.026
	CRR073306	Third green 1	0.607
	CRR073307	Third green 2	0.530
	CRR073308	Third green 3	0.573
	CRR073309	Second white 1	0.540
	CRR073310	Second white 2	1.059
	CRR073311	Second white 3	0.889
	CRR073312	Silver flowering 1	0.027
	CRR073313	Silver flowering 2	0.063
	CRR073314	Silver flowering 3	0.486
	CRR073315	Gold flowering 1	128.233
	CRR073316	Gold flowering 2	170.632
	CRR073317	Gold flowering 3	85.012
	CRR073318	Tawny withering 1	0.866
	CRR073319	Tawny withering 2	0.620
	CRR073320	Tawny withering 3	0.328