Detail information of GWHGAAZE011854


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281045.11.21971E-94PREDICTED: E3 ubiquitin-protein ligase RHF1A [Vitis vinifera]
Swissprottr|Q4TU14|RHF1A_ARATH2E-51E3 ubiquitin-protein ligase RHF1A
trEMBLtr|D7T6T1|D7T6T1_VITVI5E-95Putative uncharacterized protein {ECO:0000313|EMBL:CBI26202.3}
TAIR10AT4G14220.13E-45RING-H2 group F1A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7422558174228043+
GWHAAZE00000003mRNA7422558174228043+
GWHAAZE00000003exon7422558174225808+
GWHAAZE00000003exon7422611974226165+
GWHAAZE00000003exon7422629074226352+
GWHAAZE00000003exon7422649174226581+
GWHAAZE00000003exon7422666274226966+
GWHAAZE00000003exon7422734074227426+
GWHAAZE00000003exon7422754274227878+
GWHAAZE00000003exon7422798774228043+
GWHAAZE00000003CDS7422558174225808+
GWHAAZE00000003CDS7422611974226165+
GWHAAZE00000003CDS7422629074226352+
GWHAAZE00000003CDS7422649174226581+
GWHAAZE00000003CDS7422666274226966+
GWHAAZE00000003CDS7422734074227426+
GWHAAZE00000003CDS7422754274227878+
GWHAAZE00000003CDS7422798774228043+
Transcript Sequence

Network for GWHGAAZE011854

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC4761020.00015
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf66.157
SRR3591706second leaf32.362
SRR3591707mature leaf22.637
SRR3591708Shoot apex42.690
SRR3591709Stem72.902
SRR3591710White floral bud22.478
SRR3591711White flower25.274
SRR3591712Green floral bud30.118
SRR3591713Yellow flower16.448
SRP173429 SRR8316895Juvenile bud stage 14.972
SRR8316896Juvenile bud stage 23.997
SRR8316897Juvenile bud stage 12.541
SRR8316894Third green stage 11.460
SRR8316900Third green stage 27.369
SRR8316901Third green stage 28.184
SRR8316898Complete white stage 8.344
SRR8316899Complete white stage 38.114
SRR8316903Complete white stage 17.995
SRR8316902Silver flowering stage8.789
SRR8316904Silver flowering stage11.186
SRR8316905Silver flowering stage5.226
SRR8316906Gold flowering stage 15.769
SRR8316907Gold flowering stage 11.428
SRR8316908Gold flowering stage 16.258
SRP132670SRR6706286Control26.856
SRR6706287Light intensity 50%27.137
SRR6706288Light intensity 20%26.228
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.208
CNS0095593Slightly white alabastrum(diploid) 217.872
CNS0095594Slightly white alabastrum(diploid) 314.188
CNS0095595Whole white alabastrum(diploid) 214.131
CNS0095596Whole white alabastrum(diploid) 310.035
CNS0095597Whole white alabastrum(diploid) 49.504
CNS0095598Silvery flower (diploied) 113.002
CNS0095599Silvery flower (diploied) 219.187
CNS0095600Silvery flower (diploied) 319.534
CNS0095601Golden flower (diploid) 127.290
CNS0095602Golden flower (diploid) 225.311
CNS0095603Golden flower (diploid) 323.076
CNS0095604Slightly white alabastrum(tetraploid) 115.711
CNS0095605Slightly white alabastrum(tetraploid) 210.521
CNS0095606Slightly white alabastrum(tetraploid) 328.025
CNS0095607Whole white alabastrum(tetraploid) 18.658
CNS0095608Whole white alabastrum(tetraploid) 26.357
CNS0095609Whole white alabastrum(tetraploid) 317.974
CNS0095610Silvery flower (tetraploid) 117.008
CNS0095611Silvery flower (tetraploid) 216.602
CNS0095612Silvery flower (tetraploid) 311.234
CNS0095613Golden flower (tetraploid) 17.258
CNS0095614Golden flower (tetraploid) 212.322
CNS0095615Golden flower (tetraploid) 39.359
CRA001975CRR073297Stem 133.624
CRR073298Stem 228.020
CRR073299Stem 333.215
CRR073300Leaf 135.160
CRR073301Leaf 233.926
CRR073302Leaf 329.231
CRR073303Juvenile bud 134.670
CRR073304Juvenile bud 220.015
CRR073305Juvenile bud 333.924
CRR073306Third green 118.319
CRR073307Third green 211.589
CRR073308Third green 318.920
CRR073309Second white 126.694
CRR073310Second white 216.130
CRR073311Second white 317.297
CRR073312Silver flowering 112.794
CRR073313Silver flowering 220.369
CRR073314Silver flowering 314.880
CRR073315Gold flowering 112.198
CRR073316Gold flowering 210.226
CRR073317Gold flowering 38.411
CRR073318Tawny withering 142.661
CRR073319Tawny withering 234.252
CRR073320Tawny withering 328.482