Gene detail

Detail information of GWHGAAZE011881

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	9.8246E-165	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	3E-127	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	4E-165	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G55950.1	7E-112	CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74622069	74624270	-
GWHAAZE00000003	mRNA	74622069	74624270	-
GWHAAZE00000003	exon	74622069	74624270	-
GWHAAZE00000003	CDS	74622069	74624270	-

Transcript Sequence
>GWHTAAZE011893 ATGGCTGTACCAGTAACACCACTGCCGGAGCACTTCAACTCGCTGCCGTTGCCTTTGCCGGAGCAATTATGCCGTCCCTTCTCCTTTGCCGAGATCTTATCCGCAACTAACAACTTCGACGATTCATTGGTTATTGGGGAAGGCGGATTTGGTAAAGTATACAAAGGGGTCATTGACAACGGGGCAAGTATCGTTGCTATTAAACGGCTAAGCTCTGCGTCTAAGCAAGGAGATTCCGAATTCAGAACCGAGATTGAGATGCTCTCAAAATTCCGGCACTCTCATATCGTATGTTTAATTGGGTACTGTTATAATTCCACTGAGATGATCCTCGTTTATGAGTACATGGTCAATGGGTCTCTGGCAGATCACTTGTACAAAATTGGCAAGTATGGTACTAGTTCTACTTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTCCATACAGGTACCGGTGTTCAAGACAATGTCATACATCGTGATGTGAAGAGTTCGAACATCCTGTTAGATAAGAATTGCACATCTAAGGTTTCAGACTTTGGGTTGTCTAGATTTAGCCCAATTGATCAGTCTCGCACTCATATAACCACAAATGTTAAAGGGACAACGGGGTATATGGATCCAGAATATATGTTGACCTTCCGATTGACTATGAAATCCGATGTCTACTCTTTTGGGGTTGTACTATTTGAAGTGTTGTGCGGAAGGCGAGCAGTGGATTTTAGACTTGATGAAGAGCAATGGAGTCTTGCTAGGTGGGCCCAATATTGTATTGAAGGAGGAACACTTCATCAGATCATCGATCCTAATTTGAAGTGGGAAATTTTGCCGGAATCTTTGACAGAGTTTGCACGAATTGCAAATCAATGCTTATGTTACCGGTCAAAAAAACGTCCTACGATGACTCAGGTCGTGGGGTCACTCGAGTTAGCGTTGGCATTGCAACTAGGACGCAAAGATTCTTCTGCATTTGATACGGAAATGTTTTGTACTAGTGAGGCAGATAATGACCTAGATAAGGTTGATCATACATCGGTACAAGAAGGGGCTGTCAAATTTGGGAGTCGTGACGGGGATAATAAAGACATCCTGCGGTCCCATGTGAAGCCTACCAAAAGAAAGGCTCTCACAAAAATGATGCAACTGTTTATGTTTCGCCCAGTTCAAGATGGTTCAGGCACCAACTTAAGGAGCGGCACCTCAAAGAAATTCATAGACATGGCCGAAGAATTCTTGTTTTCGGACCTTGCTGCTGCCACCAACAATTTCTCCTTGGAAAACAAGATTGGTGCCAGTAGCCTTGGGAAAGTGTACAAAGGCAAACTACTAGACGGACGAGAGGTCGCTATTAAAAGGGGAGAGACTGGTTTAAAGAAGAAGAAATTTCTAGAGCAAGAGGGCAACAGCGCTTTCAATTCAGAATTGGCTTCCTTGTCTAGGCTTCACCACAAATACTTGGTTAGCCTAGTTGGGTTTTGCGAATTAGGGAGGGACAAAGAGGTGCTGTTAGTTTATGAATACATGGAAAATGGATCACTTTACGATCATTTGCACGGCAAGTACAACGTGGAAAAGAGTAGCAGCCTCAATTCTTGGAAAATGAGGATCAAAATATCATTACAAGCTGCACGTGGTATCGAATACCTCCACGACTACGCAGTTCCTCCTAGAATTCATCGAGACATTAAGTCTTCTAACATACTACTGGATGCAAAATGGACTGCCAGAGTATCTGATTTTGGATTATCAATTGCATTGATGGGACCAGAAGCTGATCATCATGATTCTATTCCGATGGAGTTAGTTGGGACATTTGGGTACATAGATCCAGATTACTTTCAACTGCAAGTGTTGACTGCAAAGAGTGATGTATATAGTCTTGGAGTTGTGTTGCTAGAGCTTTTGACAGGTAAGATGGCTGTATTTAAGAATGATGAAAATGGTGTTCCAACTAGTGTAGTGGATTTTGCCGTACCAGCCATTATAGCCGAAGAATTGCCCAAGGTTTTGGACCCGAGGGTTGGATCGCAGCTGGAGAAGAATGAAGCAGAGGCAGTAGAGCTAGTTGCTTATACTGCAATTCGCTGTGTGAATTTGAAAGGGATAGAGAGACCTAACATGGCTGACATTGTGGCGAATTTGGAGCGAGCGTTGGCTTTATGCGATGATATATAG

Network for GWHGAAZE011881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0150

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	314	2.00E-50
PF00069.26	Pkinase	433	660	1.40E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.947
	SRR3591706	second leaf	5.172
	SRR3591707	mature leaf	2.366
	SRR3591708	Shoot apex	11.954
	SRR3591709	Stem	21.067
	SRR3591710	White floral bud	8.008
	SRR3591711	White flower	9.040
	SRR3591712	Green floral bud	6.931
	SRR3591713	Yellow flower	2.180
SRP173429	SRR8316895	Juvenile bud stage	10.880
	SRR8316896	Juvenile bud stage	7.214
	SRR8316897	Juvenile bud stage	6.258
	SRR8316894	Third green stage	8.941
	SRR8316900	Third green stage	12.529
	SRR8316901	Third green stage	12.735
	SRR8316898	Complete white stage	0.870
	SRR8316899	Complete white stage	21.794
	SRR8316903	Complete white stage	0.984
	SRR8316902	Silver flowering stage	0.480
	SRR8316904	Silver flowering stage	0.378
	SRR8316905	Silver flowering stage	0.562
	SRR8316906	Gold flowering stage	1.588
	SRR8316907	Gold flowering stage	2.064
	SRR8316908	Gold flowering stage	0.414
SRP132670	SRR6706286	Control	3.860
	SRR6706287	Light intensity 50%	4.016
	SRR6706288	Light intensity 20%	3.975
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.160
	CNS0095593	Slightly white alabastrum(diploid) 2	14.647
	CNS0095594	Slightly white alabastrum(diploid) 3	10.362
	CNS0095595	Whole white alabastrum(diploid) 2	5.951
	CNS0095596	Whole white alabastrum(diploid) 3	1.927
	CNS0095597	Whole white alabastrum(diploid) 4	6.887
	CNS0095598	Silvery flower (diploied) 1	18.921
	CNS0095599	Silvery flower (diploied) 2	13.665
	CNS0095600	Silvery flower (diploied) 3	7.004
	CNS0095601	Golden flower (diploid) 1	15.954
	CNS0095602	Golden flower (diploid) 2	8.901
	CNS0095603	Golden flower (diploid) 3	9.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.514
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.775
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.297
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.207
	CNS0095610	Silvery flower (tetraploid) 1	2.129
	CNS0095611	Silvery flower (tetraploid) 2	1.613
	CNS0095612	Silvery flower (tetraploid) 3	3.466
	CNS0095613	Golden flower (tetraploid) 1	0.475
	CNS0095614	Golden flower (tetraploid) 2	0.700
	CNS0095615	Golden flower (tetraploid) 3	0.235
CRA001975	CRR073297	Stem 1	14.805
	CRR073298	Stem 2	20.064
	CRR073299	Stem 3	16.577
	CRR073300	Leaf 1	32.427
	CRR073301	Leaf 2	35.219
	CRR073302	Leaf 3	23.857
	CRR073303	Juvenile bud 1	22.517
	CRR073304	Juvenile bud 2	14.777
	CRR073305	Juvenile bud 3	51.134
	CRR073306	Third green 1	0.965
	CRR073307	Third green 2	2.307
	CRR073308	Third green 3	1.327
	CRR073309	Second white 1	0.471
	CRR073310	Second white 2	0.526
	CRR073311	Second white 3	0.387
	CRR073312	Silver flowering 1	0.578
	CRR073313	Silver flowering 2	1.003
	CRR073314	Silver flowering 3	1.895
	CRR073315	Gold flowering 1	5.855
	CRR073316	Gold flowering 2	6.775
	CRR073317	Gold flowering 3	7.298
	CRR073318	Tawny withering 1	9.856
	CRR073319	Tawny withering 2	6.245
	CRR073320	Tawny withering 3	10.625