Gene detail

Detail information of GWHGAAZE011886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	1.8311E-115	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	1E-106	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	7E-116	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	4E-94	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74734367	74738299	-
GWHAAZE00000003	mRNA	74734367	74738299	-
GWHAAZE00000003	exon	74738098	74738299	-
GWHAAZE00000003	exon	74737385	74737663	-
GWHAAZE00000003	exon	74736081	74737208	-
GWHAAZE00000003	exon	74734367	74734596	-
GWHAAZE00000003	five_prime_UTR	74738098	74738299	-
GWHAAZE00000003	five_prime_UTR	74737608	74737663	-
GWHAAZE00000003	CDS	74737385	74737607	-
GWHAAZE00000003	CDS	74736081	74737208	-
GWHAAZE00000003	CDS	74734367	74734596	-

Transcript Sequence
>GWHTAAZE011898 AACTCACACCAGTACCAGTAGTAATAATAAGAACTCAAATCAAATCATCAAAACCCAAAACCACAAATGCTACCCTCAATTTAACTGATACTAGTATATACTTGAAAGGCCCCCACTTTTTCCCAGACTTTTCTTGTGTGCTCTCTCATATTCCCCCCATCCATTACTAGCTATGGCCAAACCCTAGATCTCTTCCCCAAAGTTTTTTGTTGAAAGTACAAGGACCACAGCTGTTTAGTGGGAATAATAATAGATTGAATGAGTGAGATGAGTGGGAGTACGTCGGGCGTGACGGTGGCGTTAGCGGGAGAGGGGTTTCGGGGGCCATCGTTTACGGCGGTGCAGTGGCAGGAACTGGAGCATCAAGCCCTCATATACAAATACTTGGTGGCAGGGATACCGGTGCCTGCTGATCTTATAATCCCCATTCGGATGAGTTTAGAGGCACTCTCTGCTAGCTTTTTTCACCACCCATCTACCGGCGGCAGAGTGAAGATGGCTGTACCATTAACACCTATGCCGGAGCATTTCAACACGCTGCCGTTGCCTTTGTCAGAGCAATTATGCCGTCCCTTCTCCTTTGCTGAGATCGTATCCGCAACTAACAACTTCGACGATTCATTGGTTATTGGGCAAGGCGGATTTGGTAAAGTATACAAAGGGGTCATCGACAACGGGGCAAGTATTGTTGCTATTAAACGGCTAAGCTCTGCTTCTAAGCAAGGAGATTCTGAATTCAGAACCGAGATTGAGATGCTCTCAAAATTCCGGCACTCTCATATTGTGTCTTTAATTGGGTACTGTTATAGTTCCACTGAGATGATCCTTCTCTATGAATATATGGTCAACGGGTCTCTGGCGGATCACTTGTACAAAATTGGCAAGTATGGTACTAGTTCTAATTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTCCATACAGGTACCGGTGTTCAAGACAGTGTCATACATCGTGATGTGAAGAGTTCGAACATCCTGTTAGATAAGAATTGCATAGCTAAAGTTTCAGACTTTGGGTTGTCTAGAACCAACCCAATTGATCAGTCTTGCACTCATATCAGCACAAATGTTAAAGGGACCACGGGGTATGTGGATCCAGAATATATGCTGACCTTCCGATTAACAATGAAATCCGATGTATACTCTTTTGGGGTTGTACTATTTGAAGTGTTGTGTGGAAGGCGAGCGGTGGATTTTACACTTGACGAAGAGCAATGGAGTCTTGCTAGGTGGGCCCAAAGCTGTATTGACAAAGGAACACTTCATCGTATTATCAATCCTAATTTGTGGTTGGAAATCTTGCCAGAATCTTGGAAGGAGTTTGTGCGAATTGCAAATCAATGCTTATGTTATCGGCCAAAAAAACGCCCTACAATGACTCAAGTCGTGGGCTCACTCGAGTTGGCATTGGCATTGCAACTAGGACACAGAGATTCTTCTGCATTTGAAATGGACATTACTTGTACAAGTGAGGCAGATGAAATCATACAAAAGGTTGATTCAACAATGGTACAAGAAGTCATGCAACCGTTTATGTTGTTGACAGTTGCCGACACATCAGATGATGATCCATTACCTGCAATAGATGACCTCCAAATTTCTGGTGAACCTTTTATGGGACGGAAGCTACAAGCAAGCGGGTATTCTATTAATGGAACAACATGTTGTAACATTAACTGGGTGCGCCATTCAGAAGATGGCTCTGTTAAGTTCATAGATGGGGCAAAACAACAAAGCTCTCTTGTTAGCGTGGATGATGTTGATACAGACCTTGCCGTGAAGTTCAGCTGA

Network for GWHGAAZE011886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	24	58	5.40E-15
PF07714.18	PK_Tyr_Ser-Thr	123	395	2.90E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.449
	SRR3591706	second leaf	6.117
	SRR3591707	mature leaf	8.041
	SRR3591708	Shoot apex	15.059
	SRR3591709	Stem	27.771
	SRR3591710	White floral bud	5.673
	SRR3591711	White flower	12.922
	SRR3591712	Green floral bud	4.293
	SRR3591713	Yellow flower	4.769
SRP173429	SRR8316895	Juvenile bud stage	19.423
	SRR8316896	Juvenile bud stage	13.531
	SRR8316897	Juvenile bud stage	6.592
	SRR8316894	Third green stage	4.529
	SRR8316900	Third green stage	7.110
	SRR8316901	Third green stage	7.343
	SRR8316898	Complete white stage	0.736
	SRR8316899	Complete white stage	18.449
	SRR8316903	Complete white stage	2.210
	SRR8316902	Silver flowering stage	2.791
	SRR8316904	Silver flowering stage	1.742
	SRR8316905	Silver flowering stage	0.716
	SRR8316906	Gold flowering stage	1.954
	SRR8316907	Gold flowering stage	1.435
	SRR8316908	Gold flowering stage	1.293
SRP132670	SRR6706286	Control	6.427
	SRR6706287	Light intensity 50%	7.167
	SRR6706288	Light intensity 20%	6.347
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.864
	CNS0095593	Slightly white alabastrum(diploid) 2	8.813
	CNS0095594	Slightly white alabastrum(diploid) 3	6.837
	CNS0095595	Whole white alabastrum(diploid) 2	9.743
	CNS0095596	Whole white alabastrum(diploid) 3	2.106
	CNS0095597	Whole white alabastrum(diploid) 4	4.929
	CNS0095598	Silvery flower (diploied) 1	20.238
	CNS0095599	Silvery flower (diploied) 2	17.121
	CNS0095600	Silvery flower (diploied) 3	12.978
	CNS0095601	Golden flower (diploid) 1	15.971
	CNS0095602	Golden flower (diploid) 2	19.705
	CNS0095603	Golden flower (diploid) 3	20.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.900
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.902
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.248
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.665
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.888
	CNS0095610	Silvery flower (tetraploid) 1	1.353
	CNS0095611	Silvery flower (tetraploid) 2	1.412
	CNS0095612	Silvery flower (tetraploid) 3	0.542
	CNS0095613	Golden flower (tetraploid) 1	0.209
	CNS0095614	Golden flower (tetraploid) 2	1.202
	CNS0095615	Golden flower (tetraploid) 3	0.077
CRA001975	CRR073297	Stem 1	11.670
	CRR073298	Stem 2	7.095
	CRR073299	Stem 3	7.791
	CRR073300	Leaf 1	8.046
	CRR073301	Leaf 2	7.774
	CRR073302	Leaf 3	6.480
	CRR073303	Juvenile bud 1	6.069
	CRR073304	Juvenile bud 2	4.673
	CRR073305	Juvenile bud 3	7.608
	CRR073306	Third green 1	2.570
	CRR073307	Third green 2	1.638
	CRR073308	Third green 3	3.563
	CRR073309	Second white 1	1.536
	CRR073310	Second white 2	1.180
	CRR073311	Second white 3	0.606
	CRR073312	Silver flowering 1	4.123
	CRR073313	Silver flowering 2	3.233
	CRR073314	Silver flowering 3	1.762
	CRR073315	Gold flowering 1	6.342
	CRR073316	Gold flowering 2	10.996
	CRR073317	Gold flowering 3	4.412
	CRR073318	Tawny withering 1	7.361
	CRR073319	Tawny withering 2	11.946
	CRR073320	Tawny withering 3	8.313