Detail information of GWHGAAZE011952


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002312583.10cytosolic malate dehydrogenase family protein [Populus trichocarpa]
Swissprottr|Q9FSF0|MDH_TOBAC0Malate dehydrogenase
trEMBLtr|A9P8R3|A9P8R3_POPTR0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}
TAIR10AT1G04410.13E-172Lactate/malate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7616572376171119-
GWHAAZE00000003mRNA7616572376171119-
GWHAAZE00000003exon7617107776171119-
GWHAAZE00000003exon7616961176169769-
GWHAAZE00000003exon7616894176169116-
GWHAAZE00000003exon7616774676168023-
GWHAAZE00000003exon7616718576167320-
GWHAAZE00000003exon7616690876167019-
GWHAAZE00000003exon7616572376165817-
GWHAAZE00000003CDS7617107776171119-
GWHAAZE00000003CDS7616961176169769-
GWHAAZE00000003CDS7616894176169116-
GWHAAZE00000003CDS7616774676168023-
GWHAAZE00000003CDS7616718576167320-
GWHAAZE00000003CDS7616690876167019-
GWHAAZE00000003CDS7616572376165817-
Transcript Sequence

Network for GWHGAAZE011952

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.24Ldh_1_N61535.60E-33
PF02866.19Ldh_1_C1573251.40E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00025MDH1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270
Proximal tubule bicarbonate reclamationmap04964

Gene Ontology

GO term OntologyName
GO:0006108biological_processmalate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0005975biological_processcarbohydrate metabolic process
GO:0019752biological_processcarboxylic acid metabolic process
GO:0016615molecular_functionmalate dehydrogenase activity
GO:0003824molecular_functioncatalytic activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0030060molecular_functionL-malate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1164.911
SRR3591706second leaf457.959
SRR3591707mature leaf230.815
SRR3591708Shoot apex670.745
SRR3591709Stem649.966
SRR3591710White floral bud420.200
SRR3591711White flower429.194
SRR3591712Green floral bud680.855
SRR3591713Yellow flower208.617
SRP173429 SRR8316895Juvenile bud stage 341.457
SRR8316896Juvenile bud stage 400.774
SRR8316897Juvenile bud stage 300.987
SRR8316894Third green stage 230.713
SRR8316900Third green stage 952.768
SRR8316901Third green stage 726.654
SRR8316898Complete white stage 359.485
SRR8316899Complete white stage 916.689
SRR8316903Complete white stage 442.037
SRR8316902Silver flowering stage223.355
SRR8316904Silver flowering stage237.375
SRR8316905Silver flowering stage112.444
SRR8316906Gold flowering stage 246.117
SRR8316907Gold flowering stage 296.895
SRR8316908Gold flowering stage 377.983
SRP132670SRR6706286Control842.140
SRR6706287Light intensity 50%812.906
SRR6706288Light intensity 20%915.781
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1394.592
CNS0095593Slightly white alabastrum(diploid) 2498.951
CNS0095594Slightly white alabastrum(diploid) 3333.914
CNS0095595Whole white alabastrum(diploid) 2445.805
CNS0095596Whole white alabastrum(diploid) 3514.828
CNS0095597Whole white alabastrum(diploid) 4393.886
CNS0095598Silvery flower (diploied) 1310.967
CNS0095599Silvery flower (diploied) 2329.581
CNS0095600Silvery flower (diploied) 3411.031
CNS0095601Golden flower (diploid) 1231.298
CNS0095602Golden flower (diploid) 2312.951
CNS0095603Golden flower (diploid) 3299.252
CNS0095604Slightly white alabastrum(tetraploid) 1494.116
CNS0095605Slightly white alabastrum(tetraploid) 2440.939
CNS0095606Slightly white alabastrum(tetraploid) 3752.992
CNS0095607Whole white alabastrum(tetraploid) 1302.789
CNS0095608Whole white alabastrum(tetraploid) 2305.988
CNS0095609Whole white alabastrum(tetraploid) 3663.488
CNS0095610Silvery flower (tetraploid) 1461.498
CNS0095611Silvery flower (tetraploid) 2420.418
CNS0095612Silvery flower (tetraploid) 3317.205
CNS0095613Golden flower (tetraploid) 1126.083
CNS0095614Golden flower (tetraploid) 2279.958
CNS0095615Golden flower (tetraploid) 359.347
CRA001975CRR073297Stem 1696.784
CRR073298Stem 2654.225
CRR073299Stem 3845.173
CRR073300Leaf 1859.321
CRR073301Leaf 2882.274
CRR073302Leaf 31224.036
CRR073303Juvenile bud 11365.273
CRR073304Juvenile bud 21187.692
CRR073305Juvenile bud 31317.024
CRR073306Third green 1419.627
CRR073307Third green 2419.775
CRR073308Third green 3380.682
CRR073309Second white 1339.290
CRR073310Second white 2154.499
CRR073311Second white 387.866
CRR073312Silver flowering 173.163
CRR073313Silver flowering 2104.649
CRR073314Silver flowering 367.912
CRR073315Gold flowering 1265.899
CRR073316Gold flowering 2293.126
CRR073317Gold flowering 3316.395
CRR073318Tawny withering 1770.391
CRR073319Tawny withering 2585.074
CRR073320Tawny withering 3728.629