Gene detail

Detail information of GWHGAAZE011962

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11910.1	1.11509E-43	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	9E-39	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A067ZY29\|A0A067ZY29_PLAAC	3E-44	LRR.XII-like protein {ECO:0000313\|EMBL:AHZ44755.1} (Fragment)
TAIR10	AT4G08850.1	3E-35	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	76650068	76650937	+
GWHAAZE00000003	mRNA	76650068	76650937	+
GWHAAZE00000003	exon	76650068	76650347	+
GWHAAZE00000003	exon	76650513	76650937	+
GWHAAZE00000003	CDS	76650068	76650347	+
GWHAAZE00000003	CDS	76650513	76650937	+

Transcript Sequence
>GWHTAAZE011974 TCTTCTATATATAATCTTTCCTCATTGACTCTCTTGTCTTTGTTTGATAATCAACTTCGTGGAAGTATTCCGCAAAATTTAGGCCTAAATCTTCCTCATATCCAACATCTTGAACTGTTTGGAAACCAATTTACTGGTGCCATTCCAACTTCCTTAACTAATGCTTCTGAACTGGTATGTCTTGGGTTATCCAACAATAATTTTAGGGGAAACATTCCTAGCAATTTTGGAAGCCTCCAGCACCTTCTGCGTCTTTCTCTGGATTTTAATTTCCTAGGAAGAGTCATCCCTTCAGGATTTGGTAGTCTTTCCAATCTAGAAACATTAAGCATAGGGAAAAACCATTTTGAAGGTGAAATTCCAAATTTTATTGGTGGTATGCAGAAATTACAACGGTTGGGTCTAAAAACAAATCATTTTTCTGGCCAAATACCAACATTTTTTGGAAATCTATCTTTCTTGAGCCATTTGCATTTACAAGACAACAAATTAGAGGGGACCATCCCTTCAAGTCTTGGAAACTGCAAAAACTTGATATCCCTAGATCTTTCTCAAAATAATCTTAGTGGCAGTACCCAAAGAACTTTTAGTGCTTTTGCTATATTTGAACTAAACCTATCTCGAATCGTCGCTGGACCCATACCTTCCCAAGTTGGTAATATGAAAATCTGGTTGAACTTGCGATCGAAAATAAATTATCGGTGA

Network for GWHGAAZE011962

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0082

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	81	140	2.60E-07
PF13855.7	LRR_8	154	207	1.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.184
	SRR3591706	second leaf	0.477
	SRR3591707	mature leaf	0.597
	SRR3591708	Shoot apex	0.431
	SRR3591709	Stem	1.571
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.054
	SRR8316896	Juvenile bud stage	0.026
	SRR8316897	Juvenile bud stage	0.300
	SRR8316894	Third green stage	0.057
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.052
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.043
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.031
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.190
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.617
	CNS0095599	Silvery flower (diploied) 2	0.217
	CNS0095600	Silvery flower (diploied) 3	0.027
	CNS0095601	Golden flower (diploid) 1	0.167
	CNS0095602	Golden flower (diploid) 2	0.206
	CNS0095603	Golden flower (diploid) 3	0.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.024
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.222
	CNS0095612	Silvery flower (tetraploid) 3	0.369
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.156
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.233
	CRR073319	Tawny withering 2	0.104
	CRR073320	Tawny withering 3	0.555