Gene detail

Detail information of GWHGAAZE011976

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276057.1	0	PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q3ECP0\|TFB1A_ARATH	0	Probable RNA polymerase II transcription factor B subunit 1-1
trEMBL	tr\|D7UAQ6\|D7UAQ6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39821.3}
TAIR10	AT1G55750.1	4E-168	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	77351468	77368646	+
GWHAAZE00000003	mRNA	77351468	77368646	+
GWHAAZE00000003	exon	77351468	77351548	+
GWHAAZE00000003	exon	77352025	77352103	+
GWHAAZE00000003	exon	77352602	77352663	+
GWHAAZE00000003	exon	77353125	77353188	+
GWHAAZE00000003	exon	77353457	77353583	+
GWHAAZE00000003	exon	77354295	77354370	+
GWHAAZE00000003	exon	77354833	77354928	+
GWHAAZE00000003	exon	77355153	77355197	+
GWHAAZE00000003	exon	77357176	77357331	+
GWHAAZE00000003	exon	77357476	77357541	+
GWHAAZE00000003	exon	77358404	77358527	+
GWHAAZE00000003	exon	77358681	77358726	+
GWHAAZE00000003	exon	77358816	77358993	+
GWHAAZE00000003	exon	77359150	77359341	+
GWHAAZE00000003	exon	77359450	77359563	+
GWHAAZE00000003	exon	77361056	77361103	+
GWHAAZE00000003	exon	77367945	77368013	+
GWHAAZE00000003	exon	77368472	77368646	+
GWHAAZE00000003	CDS	77351468	77351548	+
GWHAAZE00000003	CDS	77352025	77352103	+
GWHAAZE00000003	CDS	77352602	77352663	+
GWHAAZE00000003	CDS	77353125	77353188	+
GWHAAZE00000003	CDS	77353457	77353583	+
GWHAAZE00000003	CDS	77354295	77354370	+
GWHAAZE00000003	CDS	77354833	77354928	+
GWHAAZE00000003	CDS	77355153	77355197	+
GWHAAZE00000003	CDS	77357176	77357331	+
GWHAAZE00000003	CDS	77357476	77357541	+
GWHAAZE00000003	CDS	77358404	77358527	+
GWHAAZE00000003	CDS	77358681	77358726	+
GWHAAZE00000003	CDS	77358816	77358993	+
GWHAAZE00000003	CDS	77359150	77359341	+
GWHAAZE00000003	CDS	77359450	77359563	+
GWHAAZE00000003	CDS	77361056	77361103	+
GWHAAZE00000003	CDS	77367945	77368013	+
GWHAAZE00000003	CDS	77368472	77368558	+
GWHAAZE00000003	three_prime_UTR	77368559	77368646	+

Transcript Sequence
>GWHTAAZE011988 ATGACGGATGGGCAGGTCACTAAGCGTGCCAAGTTTAAATCTTCAGTTAAGGACCCTGGTGTTTCTGGCGTCTTGAAAATGAGCCGGGAGAAACTTGTGTTTATGCCTAATGATCCAAAATCATCAGCAAGGCTTAACATAGGGTTTAAATTGATCAAAGGTCACAAATTCACCAAGGAGGGTTCTAGTAAACAAGCTCTACTTAATCTTACCCAGGATCAGGGTGGAAGTTACATCTTTGAGTTTGAATGCTTTTCGGATCGTGATGTCTGCCGAGAGTTTGTTGCCACAGTGCTCGCAAATTCTGGAGACACTGGTAAAGCAAGTTCGGAAAGATCAGCTATTCCACATCACAATGAACAACTTAGCACAGCAGAGATGGAACGTCGGATTAAGCTCTTACAGGAGGATAGCGAGTTGCAGAAACTTCATAAGCAATTTGTGATTGGAGGTGTGCTGACAGAGGCTGAATTTTGGGCAACAAGAAAGAAGTTGCTGAACAATAAAGCAGACAGAAAGACAAAACAACGTGTGGGGTTAAAAAGTGATATGATTTTCAATGTCAGACCATCATCGGATGGTCAGTCGAACAAAGTTACATTCAACTTGACACCAGAAATTATTCACCAGATGACAGAAAAGGATTTCTGGACCAAATATTGGAGAGCGGAATATCTACACAGCACAAAAAATATTGGCGCAGCTGCAGCAGAAGCTGCTGAAGATGAGGAGCTTGCTGTTTTCTTGATGAAAGACGAGATATTGGCTAGTGAAGCTCGGCGGAAGATCAGACGGGTTGATCCAACGTTGGACATGGAAGCTGATGAAGGGGATGATTATACGCATCTTCCGGATCACGGGCTAACGCATGATGTTACCACGGATGTGATTGAGGCACAGTATGAGCCATACAGGTGGTCTTTTTTGCAAGACCTCAACCGGCATGCGGCAGTTGTTCTTGAAGGAAGAGCTATAGATGTGGAGTTGGGAGATACAAGGGCTGTTGCTGAAGCGCTTACCAGGGGTGGGGGTATCAAAAATCTGCACTTAACAGTTTTAAATTTCCTAGCAGTCGAGTTAGCTAATGAAGCCTCTGGTTGCATTGTGGATCAAAAGCAATTAGATAGGCTTTCTCGGATGGCCGAGATTGAGGATCTTCAGGGACCTCGTGACCCTCCAGTTGCACCACTTTATATTAAGGATCCTCGTGAGTACTTCGATTCTCAACAAGCTAATGCATTAAGAACTCTGGGAGACACACAAGCTGGAACAAGACAAATGAAACGTAGCATGAGCACACAGGAAGTGTATGGTTCTTTAAAAAAGTTGATCTCCGAAATTAAAGCCGTAGGATTGAGTGATCCCGTAATTAAACCTGAAATTGCTCTCCAGGTTCTCAGTGGATTGACCCAAAATATATCAAGCACTAGGTATAACTTCGGGAAGAAACCACATGAGAGTTTTTTGGATAGATTGCCAAACATCACTAAAGAGGAACTCTTACATGCGAGCAAAGTGAAGGATGCCATGTCACAAATTTACCCAAAGCTACAGGAGATTAAGGAATCGGTGCCGTCAGATTTCCGGCATCAAGTTTCGCTTCTTGTTCAGCCAATGCTTCAGGCTCTAGATGCTGCTTTTGCACATTATGATGCTGATTTACAGAAGAGATCAACTAAGAGTGGACAGAGACCCAATGGATTTGCCTAAAGAAGACCAATTTACGTTACCCACTTTTTTTTCGTTCATTTTGGTCATTATACGATTACATTACGTCTAACAAAATTTTGCGCACAGC

Network for GWHGAAZE011976

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08567.12	PH_TFIIH	22	93	8.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03141	TFIIH1, GTF2H1, TFB1	Basal transcription factors	map03022
K03141	TFIIH1, GTF2H1, TFB1	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.071
	SRR3591706	second leaf	3.986
	SRR3591707	mature leaf	3.071
	SRR3591708	Shoot apex	7.560
	SRR3591709	Stem	6.755
	SRR3591710	White floral bud	6.203
	SRR3591711	White flower	4.602
	SRR3591712	Green floral bud	8.670
	SRR3591713	Yellow flower	2.907
SRP173429	SRR8316895	Juvenile bud stage	6.338
	SRR8316896	Juvenile bud stage	9.427
	SRR8316897	Juvenile bud stage	6.334
	SRR8316894	Third green stage	3.409
	SRR8316900	Third green stage	6.625
	SRR8316901	Third green stage	7.957
	SRR8316898	Complete white stage	1.201
	SRR8316899	Complete white stage	5.448
	SRR8316903	Complete white stage	3.019
	SRR8316902	Silver flowering stage	1.335
	SRR8316904	Silver flowering stage	1.707
	SRR8316905	Silver flowering stage	0.493
	SRR8316906	Gold flowering stage	1.580
	SRR8316907	Gold flowering stage	1.854
	SRR8316908	Gold flowering stage	4.136
SRP132670	SRR6706286	Control	6.116
	SRR6706287	Light intensity 50%	6.611
	SRR6706288	Light intensity 20%	6.590
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.147
	CNS0095593	Slightly white alabastrum(diploid) 2	5.895
	CNS0095594	Slightly white alabastrum(diploid) 3	8.186
	CNS0095595	Whole white alabastrum(diploid) 2	5.548
	CNS0095596	Whole white alabastrum(diploid) 3	8.032
	CNS0095597	Whole white alabastrum(diploid) 4	6.005
	CNS0095598	Silvery flower (diploied) 1	4.280
	CNS0095599	Silvery flower (diploied) 2	3.238
	CNS0095600	Silvery flower (diploied) 3	2.431
	CNS0095601	Golden flower (diploid) 1	2.786
	CNS0095602	Golden flower (diploid) 2	2.085
	CNS0095603	Golden flower (diploid) 3	2.315
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.295
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.461
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.947
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.190
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.278
	CNS0095610	Silvery flower (tetraploid) 1	3.669
	CNS0095611	Silvery flower (tetraploid) 2	4.915
	CNS0095612	Silvery flower (tetraploid) 3	3.760
	CNS0095613	Golden flower (tetraploid) 1	1.916
	CNS0095614	Golden flower (tetraploid) 2	3.307
	CNS0095615	Golden flower (tetraploid) 3	2.155
CRA001975	CRR073297	Stem 1	7.894
	CRR073298	Stem 2	8.531
	CRR073299	Stem 3	5.785
	CRR073300	Leaf 1	7.139
	CRR073301	Leaf 2	7.155
	CRR073302	Leaf 3	4.072
	CRR073303	Juvenile bud 1	4.020
	CRR073304	Juvenile bud 2	4.486
	CRR073305	Juvenile bud 3	4.254
	CRR073306	Third green 1	0.855
	CRR073307	Third green 2	0.823
	CRR073308	Third green 3	1.484
	CRR073309	Second white 1	0.169
	CRR073310	Second white 2	0.295
	CRR073311	Second white 3	0.685
	CRR073312	Silver flowering 1	0.304
	CRR073313	Silver flowering 2	0.282
	CRR073314	Silver flowering 3	0.587
	CRR073315	Gold flowering 1	0.606
	CRR073316	Gold flowering 2	1.223
	CRR073317	Gold flowering 3	0.706
	CRR073318	Tawny withering 1	5.930
	CRR073319	Tawny withering 2	5.470
	CRR073320	Tawny withering 3	7.671