Gene detail

Detail information of GWHGAAZE011991

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99166.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TSF1\|A0A068TSF1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99166.1}
TAIR10	AT1G06750.1	1E-145	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	77988621	77998340	+
GWHAAZE00000003	mRNA	77988621	77998340	+
GWHAAZE00000003	exon	77988621	77988630	+
GWHAAZE00000003	exon	77988732	77988926	+
GWHAAZE00000003	exon	77990315	77990538	+
GWHAAZE00000003	exon	77994840	77995090	+
GWHAAZE00000003	exon	77995940	77996069	+
GWHAAZE00000003	exon	77996331	77996656	+
GWHAAZE00000003	exon	77997416	77997560	+
GWHAAZE00000003	exon	77998101	77998340	+
GWHAAZE00000003	CDS	77988621	77988630	+
GWHAAZE00000003	CDS	77988732	77988926	+
GWHAAZE00000003	CDS	77990315	77990538	+
GWHAAZE00000003	CDS	77994840	77995090	+
GWHAAZE00000003	CDS	77995940	77996069	+
GWHAAZE00000003	CDS	77996331	77996656	+
GWHAAZE00000003	CDS	77997416	77997560	+
GWHAAZE00000003	CDS	77998101	77998340	+

Transcript Sequence
>GWHTAAZE012003 ATGCAGAAAGATGGATTTGGGAAAGTTATTTTTGCACACTTTCTTGCTGTAACTGTAATCGGATTCATTTACGCAACTGTGATGAACTATCGGCGGCGAAATTCAAAAGAATCTAAGCCGTCCAAATATCAAAATCTTGTTCCCATCTTGGGGAGAACGGAGTCCGGCCGTACAGTAACAGTCGAAAGATTTTCCAATTATGTTGCTAAGCAAATAGGGTTGAAAGAGGCTGGTGAGTACCCACAATTGTCACAGTTAGCATATGAATATCTGACGCAATCAAAAGGGGCAGATGAAAAAATGTATGAGTATTTTGCCACTCAGCCAAATGCTGACTCACTCTATGTTAAGCTGGTTGGAGAGCTTGACAGATGCATTCTTTCTTACTTTGCCTTTCACTGGAGTCAGGCTCCTCTCATGATCACTCAGTTCATATGTTTGAGTTGTGATAGGAAGTTGAGATTTGAGAGGGTAATTAAGGACTTGAAAGTGACAAACGTGTTCTCAACGTTGATGGTGGAGTTGAAAGCCATAGGATGCAGTGACACGTCGAAGGGGGAATCCGAATGTACGGAGGTGATGGTGCCAGTGGCTCACAATGAGAGAAGCCCAGTCCTACTTTTCATGGGTGGTGGAATGGGTGCCGGCAAAAGCACTGTCCTCAAAGACATCCTCGATGAACCATTTTGGGCAGGAGCAAAGGAGAAAGCAGTAGTGGTAGAAGCGGATGCTTTTAAAGAAACAGACGTTATCTACAAAGCCATTAAATCTATTGGCCATCATCATGACATGCTTCATACTTCTGAATTGGTGCACCAAACATCAACGGATGCAGCATCATCGCTACTAGTAGCAGCACTGAATAAAGGGCGTGACGTGATAATGGATGGTACATTTTCATGGGAGCCATTTGTGGAGCAGACGGTAGCCATGGCTAGAAACGTTCACAAAACGCCGTATAAAATGGGAGTCGGGTACAAGGTCTCACCTGATGGCACCATTACTGAAAATTATTGGGAACCAGTGAAGGATGAAAGAGGAGAAGAATTAAAGGTTGAAACTAATAGAAGACCATACAGAATAGAGTTGGTTGGGGTTGTGTGTGATGCTTATCTTGCTGTTGTTAGGGGAATTAGGAGAGCAATAGCTACTAGCAGAGCAGTGAGGGTAAACTCACAGTTGAAATCACACAAGAGATTTGCAAGTGCATTTGAAAGATACTGTCTACTTGTTGACCATGCTAGGCTTTTTTCCACCAACGCCGTGGGTGCTTCACCAAAGTTGATAGGATGGAAAGAAGGGGAGAACAAGCTGCTAGTAGATCCAGATGAGAAGTGTTTAACTTATGTTAGCAATTTGAACGACGAAGCGGACTCAGTGCTGGAACTTTACCCACAATCCAACCAATTATTCGAGTCCGGATCTGTCTGGAACGATATCGTTTTGTCACCTACAAGGGCAACCCACCAACTTGAGCTCAAGACTGCCATTGAGAAAATTGAAAATCCAACGTTGGCCTAG

Network for GWHGAAZE011991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0214

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06414.13	Zeta_toxin	199	313	3.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.132
	SRR3591706	second leaf	18.997
	SRR3591707	mature leaf	17.925
	SRR3591708	Shoot apex	34.537
	SRR3591709	Stem	10.553
	SRR3591710	White floral bud	5.228
	SRR3591711	White flower	8.972
	SRR3591712	Green floral bud	5.261
	SRR3591713	Yellow flower	7.536
SRP173429	SRR8316895	Juvenile bud stage	7.790
	SRR8316896	Juvenile bud stage	10.538
	SRR8316897	Juvenile bud stage	2.659
	SRR8316894	Third green stage	2.900
	SRR8316900	Third green stage	6.287
	SRR8316901	Third green stage	6.476
	SRR8316898	Complete white stage	3.046
	SRR8316899	Complete white stage	22.960
	SRR8316903	Complete white stage	4.039
	SRR8316902	Silver flowering stage	1.178
	SRR8316904	Silver flowering stage	2.236
	SRR8316905	Silver flowering stage	1.221
	SRR8316906	Gold flowering stage	3.073
	SRR8316907	Gold flowering stage	2.380
	SRR8316908	Gold flowering stage	2.528
SRP132670	SRR6706286	Control	21.339
	SRR6706287	Light intensity 50%	14.586
	SRR6706288	Light intensity 20%	15.386
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.963
	CNS0095593	Slightly white alabastrum(diploid) 2	9.589
	CNS0095594	Slightly white alabastrum(diploid) 3	9.916
	CNS0095595	Whole white alabastrum(diploid) 2	5.869
	CNS0095596	Whole white alabastrum(diploid) 3	3.603
	CNS0095597	Whole white alabastrum(diploid) 4	5.907
	CNS0095598	Silvery flower (diploied) 1	13.905
	CNS0095599	Silvery flower (diploied) 2	8.199
	CNS0095600	Silvery flower (diploied) 3	6.562
	CNS0095601	Golden flower (diploid) 1	11.804
	CNS0095602	Golden flower (diploid) 2	9.643
	CNS0095603	Golden flower (diploid) 3	10.570
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.162
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.137
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.417
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.483
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.217
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.524
	CNS0095610	Silvery flower (tetraploid) 1	6.542
	CNS0095611	Silvery flower (tetraploid) 2	8.076
	CNS0095612	Silvery flower (tetraploid) 3	2.949
	CNS0095613	Golden flower (tetraploid) 1	2.890
	CNS0095614	Golden flower (tetraploid) 2	4.985
	CNS0095615	Golden flower (tetraploid) 3	1.409
CRA001975	CRR073297	Stem 1	11.749
	CRR073298	Stem 2	10.623
	CRR073299	Stem 3	12.002
	CRR073300	Leaf 1	6.397
	CRR073301	Leaf 2	7.785
	CRR073302	Leaf 3	5.412
	CRR073303	Juvenile bud 1	7.721
	CRR073304	Juvenile bud 2	4.118
	CRR073305	Juvenile bud 3	8.230
	CRR073306	Third green 1	0.587
	CRR073307	Third green 2	0.612
	CRR073308	Third green 3	0.844
	CRR073309	Second white 1	0.508
	CRR073310	Second white 2	0.427
	CRR073311	Second white 3	0.376
	CRR073312	Silver flowering 1	1.038
	CRR073313	Silver flowering 2	0.511
	CRR073314	Silver flowering 3	1.032
	CRR073315	Gold flowering 1	13.079
	CRR073316	Gold flowering 2	15.262
	CRR073317	Gold flowering 3	14.627
	CRR073318	Tawny withering 1	16.166
	CRR073319	Tawny withering 2	21.062
	CRR073320	Tawny withering 3	12.876