Gene detail

Detail information of GWHGAAZE012000

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFD62807.1	0	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Ipomoea purpurea]
Swissprot	tr\|P21357\|AROF_SOLTU	0	Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBL	tr\|H9C957\|H9C957_IPOPU	0	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000313\|EMBL:AFD62807.1}
TAIR10	AT1G22410.1	1E-166	Class-II DAHP synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	78164507	78170375	+
GWHAAZE00000003	mRNA	78164507	78170375	+
GWHAAZE00000003	exon	78164507	78165387	+
GWHAAZE00000003	exon	78166964	78167243	+
GWHAAZE00000003	exon	78167366	78167608	+
GWHAAZE00000003	exon	78170133	78170375	+
GWHAAZE00000003	CDS	78164507	78165387	+
GWHAAZE00000003	CDS	78166964	78167243	+
GWHAAZE00000003	CDS	78167366	78167608	+
GWHAAZE00000003	CDS	78170133	78170375	+

Transcript Sequence
>GWHTAAZE012012 ATGGGTGCTAATGCTATGGCTATCACAAGGGGAGGCGGCGGCGGCAACTATCTTCTCCCCCCCAAATTCTTTCAAACTCGCCAAGCTTCTTTTCTTCTATCTGCGAACCCCCCTAATTCAATCAGATTCATTCCACGCATCTCAGTCAATAATAGTTGTGCTGTTGTACCAGATAAGAAGAAGAACCCCCCTCCCATTGTCGTCTCTTCTAGTACTGATGACGATGAGCAGCGATGGCCGCGGAAGAAGCGGGCGACGGAGTGGAAGGTGGACAGCTGGAAAACGAAGGATGCATACGATAAACTGCCTCCTTACCCGAACGAGGAGGAGTTGGAGTCAGTGCTTAGAACGCTGGAAGAGTTCCCTCCGCTTGCTTTTGGCGGGGAGGCGAGGAAATTGGAGGAACACCTAGGGGAGGCTGCAAGGGGCAAGGCCTTTTTGTTGCAAGGCGGATATTGTGCTGAGAGTTTCGAGAGTTTCAATGCTTATAATATTATGGACACGTTCACGCTTCTCCTCCATATGGCCAATGTCCTCATGTTTTGTAGTGGAGGAGGAGAACAGTTACCGATCATCAAGGTTGGAAGAATGGCAGGTCAGTTTGCAAGGCACAATTGTGATGACCCGTATGAGACTCGTATGGTGGGATGTTGCGAGGAGCGCAAACTCTTGCAGCTACTGAGTTATAGAGGGGATAACGTGAATGGACCTAAGTTTGATATCAAGGAGAGGACTCCAGATCCTCAGAGATTGATAAAAGCTTATTCCCAATCTGCAGCCACCCTTAATTTATTGAGGGCTTTCGCTACCGGTGGTTACGCTGCCCTCCACAAGATTGCTGATTGGGGTTTGGATTTTATAAACCCCGATGACCTCCAAAAGTACCGTGAACTTGCTTCTAGGATGGATGAGGCCATGGGGTTTTTGTCTGCGGCTGGAGTTACGATGGACCATCATCCTATAATGAGAACCACCGATTTTTGGACTTCTCATGAGTGCTTGCATTTACCGTATGAGCAATCTCTTACTAGGATGGATTATATTTCTGGTTTGTATTATGACTGCTCGGCCCATATGCTTTGGATTGGAGAACGAACCCGCCAACTCGATGGTGCTCATGTTGAGTTCCTTAGAGGAGTTGCTAATCCCATCGGAATTAAGGTGAGTGATCTGATCGATTCTAGAGAACTAGTGAAGCTGATCAAGATTTTGAACCCTCAAAATAAGCCGGGGAGGATTACGTTAATAACAAGAATGCGTGCAGTACCCATGTTTAATTATCTTCCCGATCTAATTAGGGCAGTTAGAAGATCAGGCCAAATCGTTACTTGGGTTACTGATCCTATGCATGGTAACATTGGTAGAAATATGGGTACCAAATTTGGTAGCTTCGATTCTCTCCTACGAGAAGTGAACGCGTTCTTTGACGTGCACGAGCAAGAAGGTAGCCACCCAGGTGGAGTTCATCTAGAGATTACATGCGAAGACGTGTATGAGCGCATAGATGGTTTGAGACAGATACCCATGGAGGACAAAATGCACAAAACCACCGATGTTGACCCTAGGCTCAACGCCTCCCAGTCTCTAAAGCTTGCCTTCATGGTCGCTGACCGTCTTAAAAATAGGAAGATTTCTTTGGCAAAATAA

Network for GWHGAAZE012000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01474.17	DAHP_synth_2	88	536	4.60E-153

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01626	E2.5.1.54, aroF, aroG, aroH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0003849	molecular_function	3-deoxy-7-phosphoheptulonate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.188
	SRR8316896	Juvenile bud stage	0.589
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.038
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.143
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.051
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.038
	CNS0095610	Silvery flower (tetraploid) 1	0.047
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.289
	CRR073298	Stem 2	0.122
	CRR073299	Stem 3	0.075
	CRR073300	Leaf 1	0.057
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.035
	CRR073304	Juvenile bud 2	0.041
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.058
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.459
	CRR073319	Tawny withering 2	0.613
	CRR073320	Tawny withering 3	0.891