Detail information of GWHGAAZE012059


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002517015.11.24771E-9840S ribosomal protein S15, putative [Ricinus communis]
Swissprottr|P31674|RS15_ORYSJ7E-9640S ribosomal protein S15
trEMBLtr|B9RTE6|B9RTE6_RICCO5E-9940S ribosomal protein S15, putative {ECO:0000313|EMBL:EEF45178.1}
TAIR10AT5G09500.11E-70Ribosomal protein S19 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7935136879353848-
GWHAAZE00000003mRNA7935136879353848-
GWHAAZE00000003exon7935384679353848-
GWHAAZE00000003exon7935358179353726-
GWHAAZE00000003exon7935341379353470-
GWHAAZE00000003exon7935136879351616-
GWHAAZE00000003CDS7935384679353848-
GWHAAZE00000003CDS7935358179353726-
GWHAAZE00000003CDS7935341379353470-
GWHAAZE00000003CDS7935136879351616-
Transcript Sequence

Network for GWHGAAZE012059

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00203.22Ribosomal_S19491342.80E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02958RP-S15e, RPS15 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf320.807
SRR3591706second leaf126.566
SRR3591707mature leaf79.577
SRR3591708Shoot apex419.882
SRR3591709Stem183.171
SRR3591710White floral bud159.217
SRR3591711White flower158.888
SRR3591712Green floral bud293.254
SRR3591713Yellow flower105.686
SRP173429 SRR8316895Juvenile bud stage 166.557
SRR8316896Juvenile bud stage 220.961
SRR8316897Juvenile bud stage 124.403
SRR8316894Third green stage 77.414
SRR8316900Third green stage 272.476
SRR8316901Third green stage 304.054
SRR8316898Complete white stage 57.755
SRR8316899Complete white stage 361.755
SRR8316903Complete white stage 76.855
SRR8316902Silver flowering stage50.668
SRR8316904Silver flowering stage44.376
SRR8316905Silver flowering stage18.747
SRR8316906Gold flowering stage 66.657
SRR8316907Gold flowering stage 76.771
SRR8316908Gold flowering stage 93.259
SRP132670SRR6706286Control422.279
SRR6706287Light intensity 50%416.786
SRR6706288Light intensity 20%419.026
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1297.302
CNS0095593Slightly white alabastrum(diploid) 2367.281
CNS0095594Slightly white alabastrum(diploid) 3246.628
CNS0095595Whole white alabastrum(diploid) 2252.816
CNS0095596Whole white alabastrum(diploid) 3299.714
CNS0095597Whole white alabastrum(diploid) 4213.532
CNS0095598Silvery flower (diploied) 1203.454
CNS0095599Silvery flower (diploied) 2133.917
CNS0095600Silvery flower (diploied) 3113.415
CNS0095601Golden flower (diploid) 1194.889
CNS0095602Golden flower (diploid) 2131.461
CNS0095603Golden flower (diploid) 3129.233
CNS0095604Slightly white alabastrum(tetraploid) 1255.583
CNS0095605Slightly white alabastrum(tetraploid) 2250.390
CNS0095606Slightly white alabastrum(tetraploid) 3384.492
CNS0095607Whole white alabastrum(tetraploid) 1140.726
CNS0095608Whole white alabastrum(tetraploid) 2144.214
CNS0095609Whole white alabastrum(tetraploid) 3278.764
CNS0095610Silvery flower (tetraploid) 1104.318
CNS0095611Silvery flower (tetraploid) 2101.335
CNS0095612Silvery flower (tetraploid) 363.287
CNS0095613Golden flower (tetraploid) 153.656
CNS0095614Golden flower (tetraploid) 278.363
CNS0095615Golden flower (tetraploid) 333.875
CRA001975CRR073297Stem 1238.934
CRR073298Stem 2237.547
CRR073299Stem 3316.199
CRR073300Leaf 1265.202
CRR073301Leaf 2269.110
CRR073302Leaf 3361.682
CRR073303Juvenile bud 1272.454
CRR073304Juvenile bud 2206.667
CRR073305Juvenile bud 3294.358
CRR073306Third green 127.919
CRR073307Third green 228.511
CRR073308Third green 334.999
CRR073309Second white 134.229
CRR073310Second white 231.630
CRR073311Second white 311.539
CRR073312Silver flowering 121.779
CRR073313Silver flowering 240.502
CRR073314Silver flowering 329.092
CRR073315Gold flowering 1102.561
CRR073316Gold flowering 2116.438
CRR073317Gold flowering 3130.898
CRR073318Tawny withering 1189.699
CRR073319Tawny withering 2178.932
CRR073320Tawny withering 3201.407