Gene detail

Detail information of GWHGAAZE012093

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529305.1	1.0473E-161	Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
Swissprot	tr\|Q84MB3\|ACCH1_ARATH	1E-142	1-aminocyclopropane-1-carboxylate oxidase homolog 1
trEMBL	tr\|B9STI6\|B9STI6_RICCO	4E-162	Desacetoxyvindoline 4-hydroxylase, putative {ECO:0000313\|EMBL:EEF33074.1}
TAIR10	AT1G06620.1	2E-109	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80015385	80017893	+
GWHAAZE00000003	mRNA	80015385	80017893	+
GWHAAZE00000003	exon	80015385	80015932	+
GWHAAZE00000003	exon	80017102	80017393	+
GWHAAZE00000003	exon	80017636	80017893	+
GWHAAZE00000003	CDS	80015385	80015932	+
GWHAAZE00000003	CDS	80017102	80017393	+
GWHAAZE00000003	CDS	80017636	80017893	+

Transcript Sequence
>GWHTAAZE012105 ATGGCGGCTACAGCTATTGGCATAACTGAAATTCAAACTGCAAACGAACCGATTTACGACCGGACAAGTGAGCTAAAAGCCTTTGACGAAACTAAAGCCGGAGTCAAGGGCCTTGTTGATGCCGGAATCACACAAGTACCGCGGATCTTCCATCAACCACCCGATTGCTTCACTGAAAATCCAGACCTTAACAATCCGCAATTCAGTTTTCCGATAATAGATCTTGAAGGTATCGGTAAAGATGCAAACCAGCGCAATGAGATAATTGACAAAGTCAGAGAAGCGTCGGAGACTTGGGGTTTCTTCCAAGTGGTCAATCATGGGATCCCGGTTATCGTTTTGGAGGAGATGATTGATGGAGTGAGAAGGTTTTTTGAGCAAGATATTGAGGACAAGAAACAGTGGTATACCAGAGATCCGATGAAGTTGGTAACGTATAATAGTAATTTCGATCTGTTTACCTCGTGTGCAGCTAACTGGAGGGATGCGCTTGTGATATCTTTGGCTCCGGAACCGCCTAAACTAGAGGAATTGCCAGTCGCTTGCAGAGATATATTGATGGAATACTCTACGCAAGTAAAGAAATTGGGCTGTTTGTTGTTCGGGTTATTTTCCGAGGCTCTTGGGCTTAATCCTGATTACCTCGAAAACAACTGTGAAAATGGGTTTCTATCCGTCTGCAACTATTATCCAGCTTGCCCGCAGCCAGAGAAAACCATAGGCACAAGCAAGCACGCAGACACTGACTTATTCACAGTGCTTCTGCAAAACCATATAGGTGGCCTTCAAGTTCTTCACCAGAACCGATGGGTTGTTGTTCCCCCTACCCCTGGTGCTCTGCTTATGACAAACGATAAGTTCACAAGTGTCGAACATAGAGTACTAGCAAACCGTGCTGGTCCAAGAGTATCAGTGGCATGCTTCTTTGGCACAGTAACACGTCCATGCTCAAAGTTGTATGAACCCATTAAGGAGTTGTTATCTGAAGATAATCCCCCAAAGTATAGGGCAACCTCGATGCAAGAGTATATAGAGCATATCCGTGCAAAGGGACTTGATGGGAATTCTGCTCTGTTGCCTTTTAAGCTCCCCCCTTAG

Network for GWHGAAZE012093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0073

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	71	169	4.50E-18
PF03171.21	2OG-FeII_Oxy	225	310	3.70E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.418
	SRR3591706	second leaf	3.124
	SRR3591707	mature leaf	4.029
	SRR3591708	Shoot apex	2.115
	SRR3591709	Stem	7.148
	SRR3591710	White floral bud	0.484
	SRR3591711	White flower	0.290
	SRR3591712	Green floral bud	0.412
	SRR3591713	Yellow flower	0.624
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	4.779
	SRR8316894	Third green stage	0.234
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.074
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.032
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.044
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	2.506
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.015
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.062
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.084
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.012
	CNS0095599	Silvery flower (diploied) 2	0.191
	CNS0095600	Silvery flower (diploied) 3	0.018
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.066
	CNS0095603	Golden flower (diploid) 3	0.120
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.007
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.093
	CNS0095610	Silvery flower (tetraploid) 1	0.054
	CNS0095611	Silvery flower (tetraploid) 2	0.066
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.010
	CNS0095614	Golden flower (tetraploid) 2	0.133
	CNS0095615	Golden flower (tetraploid) 3	0.024
CRA001975	CRR073297	Stem 1	0.035
	CRR073298	Stem 2	0.096
	CRR073299	Stem 3	0.074
	CRR073300	Leaf 1	0.073
	CRR073301	Leaf 2	0.018
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.068
	CRR073304	Juvenile bud 2	0.212
	CRR073305	Juvenile bud 3	0.033
	CRR073306	Third green 1	0.040
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.011
	CRR073312	Silver flowering 1	0.011
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.260
	CRR073316	Gold flowering 2	0.268
	CRR073317	Gold flowering 3	0.120
	CRR073318	Tawny withering 1	0.207
	CRR073319	Tawny withering 2	0.028
	CRR073320	Tawny withering 3	0.012