Detail information of GWHGAAZE012102


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010650068.11.09575E-56PREDICTED: RING-H2 finger protein ATL16 [Vitis vinifera]
Swissprottr|P93823|ATL1_ARATH2E-52RING-H2 finger protein ATL1
trEMBLtr|A0A061EMD3|A0A061EMD3_THECC1E-56RING/U-box superfamily protein {ECO:0000313|EMBL:EOY06016.1}
TAIR10AT1G04360.12E-35RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8023907080239507+
GWHAAZE00000003mRNA8023907080239507+
GWHAAZE00000003exon8023907080239507+
GWHAAZE00000003CDS8023907080239507+
Transcript Sequence

Network for GWHGAAZE012102

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21031463.20E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.507
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.736
SRR3591709Stem0.482
SRR3591710White floral bud0.896
SRR3591711White flower1.113
SRR3591712Green floral bud1.366
SRR3591713Yellow flower0.876
SRP173429 SRR8316895Juvenile bud stage 0.725
SRR8316896Juvenile bud stage 0.257
SRR8316897Juvenile bud stage 0.357
SRR8316894Third green stage 0.357
SRR8316900Third green stage 1.093
SRR8316901Third green stage 1.589
SRR8316898Complete white stage 1.207
SRR8316899Complete white stage 1.534
SRR8316903Complete white stage 2.687
SRR8316902Silver flowering stage0.204
SRR8316904Silver flowering stage0.334
SRR8316905Silver flowering stage0.117
SRR8316906Gold flowering stage 0.541
SRR8316907Gold flowering stage 1.672
SRR8316908Gold flowering stage 0.626
SRP132670SRR6706286Control1.313
SRR6706287Light intensity 50%1.576
SRR6706288Light intensity 20%1.210
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.019
CNS0095593Slightly white alabastrum(diploid) 21.250
CNS0095594Slightly white alabastrum(diploid) 31.266
CNS0095595Whole white alabastrum(diploid) 21.285
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.845
CNS0095598Silvery flower (diploied) 12.026
CNS0095599Silvery flower (diploied) 20.616
CNS0095600Silvery flower (diploied) 30.488
CNS0095601Golden flower (diploid) 10.172
CNS0095602Golden flower (diploid) 20.209
CNS0095603Golden flower (diploid) 30.307
CNS0095604Slightly white alabastrum(tetraploid) 10.306
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.737
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.088
CNS0095609Whole white alabastrum(tetraploid) 30.379
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 31.333
CNS0095613Golden flower (tetraploid) 11.643
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.122
CRA001975CRR073297Stem 14.180
CRR073298Stem 25.041
CRR073299Stem 33.252
CRR073300Leaf 17.312
CRR073301Leaf 29.605
CRR073302Leaf 34.009
CRR073303Juvenile bud 13.826
CRR073304Juvenile bud 24.746
CRR073305Juvenile bud 312.036
CRR073306Third green 111.763
CRR073307Third green 26.447
CRR073308Third green 38.116
CRR073309Second white 18.441
CRR073310Second white 27.627
CRR073311Second white 316.426
CRR073312Silver flowering 118.315
CRR073313Silver flowering 214.993
CRR073314Silver flowering 319.418
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.480
CRR073317Gold flowering 30.584
CRR073318Tawny withering 17.097
CRR073319Tawny withering 28.283
CRR073320Tawny withering 38.652