Detail information of GWHGAAZE012114


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268486.11.79337E-36PREDICTED: F-box/kelch-repeat protein At3g06240-like [Vitis vinifera]
Swissprottr|Q8GXC7|FBK50_ARATH1E-23F-box/kelch-repeat protein At3g06240
trEMBLtr|F6I3R8|F6I3R8_VITVI7E-37Putative uncharacterized protein {ECO:0000313|EMBL:CCB61586.1}
TAIR10AT3G06240.19E-22F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8043846780439582-
GWHAAZE00000003mRNA8043846780439582-
GWHAAZE00000003exon8043846780439582-
GWHAAZE00000003CDS8043846780439582-
Transcript Sequence

Network for GWHGAAZE012114

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box2431.90E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.505
SRR3591706second leaf0.235
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.081
SRR3591709Stem0.088
SRR3591710White floral bud0.399
SRR3591711White flower0.588
SRR3591712Green floral bud0.478
SRR3591713Yellow flower0.428
SRP173429 SRR8316895Juvenile bud stage 1.539
SRR8316896Juvenile bud stage 3.986
SRR8316897Juvenile bud stage 3.170
SRR8316894Third green stage 0.981
SRR8316900Third green stage 1.296
SRR8316901Third green stage 2.710
SRR8316898Complete white stage 0.062
SRR8316899Complete white stage 1.601
SRR8316903Complete white stage 0.301
SRR8316902Silver flowering stage0.229
SRR8316904Silver flowering stage0.179
SRR8316905Silver flowering stage0.185
SRR8316906Gold flowering stage 0.228
SRR8316907Gold flowering stage 0.101
SRR8316908Gold flowering stage 0.090
SRP132670SRR6706286Control0.619
SRR6706287Light intensity 50%0.657
SRR6706288Light intensity 20%0.643
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.044
CNS0095593Slightly white alabastrum(diploid) 21.972
CNS0095594Slightly white alabastrum(diploid) 35.130
CNS0095595Whole white alabastrum(diploid) 22.551
CNS0095596Whole white alabastrum(diploid) 31.679
CNS0095597Whole white alabastrum(diploid) 40.778
CNS0095598Silvery flower (diploied) 10.274
CNS0095599Silvery flower (diploied) 20.923
CNS0095600Silvery flower (diploied) 31.034
CNS0095601Golden flower (diploid) 10.511
CNS0095602Golden flower (diploid) 20.768
CNS0095603Golden flower (diploid) 30.756
CNS0095604Slightly white alabastrum(tetraploid) 13.540
CNS0095605Slightly white alabastrum(tetraploid) 23.737
CNS0095606Slightly white alabastrum(tetraploid) 30.190
CNS0095607Whole white alabastrum(tetraploid) 11.412
CNS0095608Whole white alabastrum(tetraploid) 20.376
CNS0095609Whole white alabastrum(tetraploid) 30.882
CNS0095610Silvery flower (tetraploid) 10.757
CNS0095611Silvery flower (tetraploid) 20.623
CNS0095612Silvery flower (tetraploid) 30.623
CNS0095613Golden flower (tetraploid) 10.240
CNS0095614Golden flower (tetraploid) 20.503
CNS0095615Golden flower (tetraploid) 30.349
CRA001975CRR073297Stem 11.157
CRR073298Stem 21.101
CRR073299Stem 30.901
CRR073300Leaf 11.459
CRR073301Leaf 20.994
CRR073302Leaf 30.890
CRR073303Juvenile bud 10.966
CRR073304Juvenile bud 20.589
CRR073305Juvenile bud 31.901
CRR073306Third green 10.054
CRR073307Third green 20.106
CRR073308Third green 30.211
CRR073309Second white 10.052
CRR073310Second white 20.394
CRR073311Second white 30.000
CRR073312Silver flowering 10.102
CRR073313Silver flowering 20.427
CRR073314Silver flowering 30.480
CRR073315Gold flowering 10.464
CRR073316Gold flowering 20.589
CRR073317Gold flowering 32.787
CRR073318Tawny withering 10.747
CRR073319Tawny withering 21.891
CRR073320Tawny withering 30.547