Gene detail

Detail information of GWHGAAZE012123

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO98963.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C5D2\|FBL4_ARATH	F-box/LRR-repeat protein 4
trEMBL	tr\|A0A068TUD8\|A0A068TUD8_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98963.1}
TAIR10	AT4G15475.1	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80562303	80573509	+
GWHAAZE00000003	mRNA	80562303	80573509	+
GWHAAZE00000003	exon	80562303	80562632	+
GWHAAZE00000003	exon	80564993	80565235	+
GWHAAZE00000003	exon	80568485	80568891	+
GWHAAZE00000003	exon	80569511	80569696	+
GWHAAZE00000003	exon	80571230	80571422	+
GWHAAZE00000003	exon	80571759	80571835	+
GWHAAZE00000003	exon	80572190	80572340	+
GWHAAZE00000003	exon	80573213	80573509	+
GWHAAZE00000003	five_prime_UTR	80562303	80562365	+
GWHAAZE00000003	CDS	80562366	80562632	+
GWHAAZE00000003	CDS	80564993	80565235	+
GWHAAZE00000003	CDS	80568485	80568891	+
GWHAAZE00000003	CDS	80569511	80569696	+
GWHAAZE00000003	CDS	80571230	80571422	+
GWHAAZE00000003	CDS	80571759	80571835	+
GWHAAZE00000003	CDS	80572190	80572340	+
GWHAAZE00000003	CDS	80573213	80573509	+

Transcript Sequence
>GWHTAAZE012135 CCCCTTCCCACCCAAACAAACCCTCCGTATATGTATATACATACACATATGTAAACAAATGAGATGAGAGGCCATGATCGAATAAATCCGATCTTACCGGACGAGTTGATCCTCGAGATCTTCCACCATCTCGACTCCAAGCCCAGCCGCGATGCCTGCTCCCTTGTCTGCAAACGATGGCTCTACCTCGAGCGCCTCAGCCGCGACACCATCCGTATCGGGGCCTCTGGTATCCCGGATGCGTTGGTCGAGCTTTTGGCTCGTCGGTTTGTTAATGTCAGGAACGTGTTCATTGATGAAAGGCTCTCGATTTCTCTTCCCGTTGAGTTCGGAAGAAGACGTATTGCTGATCAGGCCCTTTCATCTCTCGGGCTTCATTTTGTGCCTGAGAAAAGTGGGACTGCAGACACTGAAATGGAATCATATTGTCTATCAGATGCTGGTTTGGCTGCTGTGGGTGAAGGCTTTACCAAACTTGAAAAGTTGAGCCTCATATGGTGTTCTAATGCAACAAGTGCAGGATTAAGATCCATAGCTGAGAAGTGTAGATCACTGAAATCATTGGATTTACAGGGCTGCTATGTTGGGGATCAAGGTCTAGTTGCTGTTGGGGAGTGCTGCAAGCAACTCGAAGAACTTAATTTGCGGTTTTGTGAAGGTTTGACTGACTGTGGTTTGGTTGAGTTATCTCTTGGCTGTGGACAAACTTTGAAATCGCTTGGTGTTGCTGCTTGCGCAAAAATAACCGATGTCTCCTTAGAAGCTGTTGGATCTAATTGTAAATCTCTAGAGACCTTATCATTGGACTCGGAGTTCATCCACAACAAAGGGGTACTAGCTGTAGCCAAAGGGTGTTCTCTATTGAAAGTTCTGAAGCTTCAATGCATTAATGTTACTGATGACGCTTTGCTGGGCGTTGGTGTATTTTGTTTGTCACTGGAGTTATTGTCTCTGTACAGTTTCCAAAGATTTACAGACAAGAGTCTTTGTGCTATTGGGAAAGGGTGTAAGAGTTTAAAAAAACTTACATTAAGTGATTGCTATTTTCTAAGTGACAAAGGTTTGGAAGCTGTCGCAGTTGGTTGCCCTGAGCTTACACATCTTGAAGTCAATGGCTGCCACAATATAGGAACAATTGGACTTGAGTCTATCGGAAGATCTTGCACGCGACTTTCCGAGTTGGCCTTACTGTACTGTCAAAAGATAGGTAATTATGCTCTTTCTGAAGTTGGTAGAGGCTGCAAGTACTTGCAAACTCTTAACTTGGTAGATTGCTCAAGTATTGGAGATGATGCCATATGCGGTATAGCTAGAGGTTGTAGGGACTTGAAAAAGCTTCACATTCGTAGATGTTATGAGGTTGGGAATAAGGGAATCATTGCTGTTGGGAAGAACTGTAAATTCCTTACAGATCTTAGCCTTCGATTTTGTGATAGGGTAGGGGATGAGGCTTTAATAGCTATTGGTGAGGGTTGCTCCTTACAACATTTAAATGTTAGTGGCTGCCACCAAATTGGGGATGCTGGAATTATAGCCGTTGCCAGAGGCTGTCCTGAACTCACATACTTGGATGTAAGCGTTCTTCAGAATTTGGGAGACATGGCAATGGCCGAGTTGGGTGAAGGCTGTCCCTTGCTCAGGGATATAGTGCTGTCGCATTGTCGACAAATAACCGATGTGGGTCTAGCTCACCTCGTTAGAAGGTGCGCAGGGCTTGAAACTTGCCACATGGTCTATTGCCCAGGGATCACTGCAGCAGGGGTAGCCACAGTGATATCGAGCTGTGTCAACATGAAGAAGGTGTTGGTTGAGAAGTGGAAGGTTAGCCAGAGGACTAAAAGGAGAGCAGGTTCCATTATCTCTTACCTCTGTGTTGACCTCTAG

Network for GWHGAAZE012123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	12	48	2.10E-08
PF13516.7	LRR_6	160	182	0.0059
PF13516.7	LRR_6	186	208	1.4
PF13516.7	LRR_6	315	338	0.53
PF13516.7	LRR_6	341	363	0.33
PF13516.7	LRR_6	445	467	0.11
PF13516.7	LRR_6	471	493	0.0015
PF13516.7	LRR_6	522	544	1.7

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.344
	SRR3591706	second leaf	7.857
	SRR3591707	mature leaf	10.433
	SRR3591708	Shoot apex	11.436
	SRR3591709	Stem	13.717
	SRR3591710	White floral bud	15.311
	SRR3591711	White flower	14.799
	SRR3591712	Green floral bud	18.495
	SRR3591713	Yellow flower	13.668
SRP173429	SRR8316895	Juvenile bud stage	7.097
	SRR8316896	Juvenile bud stage	13.105
	SRR8316897	Juvenile bud stage	5.482
	SRR8316894	Third green stage	5.344
	SRR8316900	Third green stage	13.976
	SRR8316901	Third green stage	14.832
	SRR8316898	Complete white stage	6.220
	SRR8316899	Complete white stage	17.546
	SRR8316903	Complete white stage	10.169
	SRR8316902	Silver flowering stage	5.726
	SRR8316904	Silver flowering stage	7.684
	SRR8316905	Silver flowering stage	4.149
	SRR8316906	Gold flowering stage	13.152
	SRR8316907	Gold flowering stage	10.549
	SRR8316908	Gold flowering stage	13.105
SRP132670	SRR6706286	Control	8.656
	SRR6706287	Light intensity 50%	9.119
	SRR6706288	Light intensity 20%	10.810
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.802
	CNS0095593	Slightly white alabastrum(diploid) 2	10.945
	CNS0095594	Slightly white alabastrum(diploid) 3	11.296
	CNS0095595	Whole white alabastrum(diploid) 2	11.787
	CNS0095596	Whole white alabastrum(diploid) 3	12.422
	CNS0095597	Whole white alabastrum(diploid) 4	11.000
	CNS0095598	Silvery flower (diploied) 1	9.924
	CNS0095599	Silvery flower (diploied) 2	8.874
	CNS0095600	Silvery flower (diploied) 3	13.437
	CNS0095601	Golden flower (diploid) 1	9.012
	CNS0095602	Golden flower (diploid) 2	14.105
	CNS0095603	Golden flower (diploid) 3	14.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.388
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.055
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.931
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.099
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.268
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.394
	CNS0095610	Silvery flower (tetraploid) 1	14.534
	CNS0095611	Silvery flower (tetraploid) 2	12.769
	CNS0095612	Silvery flower (tetraploid) 3	13.570
	CNS0095613	Golden flower (tetraploid) 1	10.225
	CNS0095614	Golden flower (tetraploid) 2	15.725
	CNS0095615	Golden flower (tetraploid) 3	17.181
CRA001975	CRR073297	Stem 1	9.941
	CRR073298	Stem 2	9.216
	CRR073299	Stem 3	9.552
	CRR073300	Leaf 1	13.795
	CRR073301	Leaf 2	13.249
	CRR073302	Leaf 3	9.655
	CRR073303	Juvenile bud 1	14.433
	CRR073304	Juvenile bud 2	9.099
	CRR073305	Juvenile bud 3	12.395
	CRR073306	Third green 1	8.511
	CRR073307	Third green 2	7.307
	CRR073308	Third green 3	7.466
	CRR073309	Second white 1	8.078
	CRR073310	Second white 2	8.742
	CRR073311	Second white 3	6.882
	CRR073312	Silver flowering 1	6.534
	CRR073313	Silver flowering 2	7.397
	CRR073314	Silver flowering 3	7.021
	CRR073315	Gold flowering 1	6.059
	CRR073316	Gold flowering 2	5.410
	CRR073317	Gold flowering 3	6.298
	CRR073318	Tawny withering 1	7.243
	CRR073319	Tawny withering 2	7.817
	CRR073320	Tawny withering 3	8.538