Gene detail

Detail information of GWHGAAZE012124

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277316.1	0	PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Vitis vinifera]
Swissprot	tr\|Q3E9D5\|DCAM4_ARATH	1E-147	S-adenosylmethionine decarboxylase 1 beta chain {ECO:0000250\|UniProtKB:P17707} (Precursor)
trEMBL	tr\|F6HDK0\|F6HDK0_VITVI	0	S-adenosylmethionine decarboxylase proenzyme {ECO:0000256\|PIRNR:PIRNR001355}
TAIR10	AT5G18930.1	9E-109	Adenosylmethionine decarboxylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80584493	80585506	+
GWHAAZE00000003	mRNA	80584493	80585506	+
GWHAAZE00000003	exon	80584493	80585506	+
GWHAAZE00000003	CDS	80584493	80585506	+

Transcript Sequence
>GWHTAAZE012136 ATGGCTGTTTCTGGGTTTGAAGGATTCGAAAAAAGACTGGAACTCCACTTCTCAGGCGACGATCCGGTGGCCGGACTCGGCCTCCGGCAGCTGGATTTCGATTCCCTGGAGCTGGTCCTCCATGAAGTGCAATGCACCGTCGTATCAGCCGTTGGTAACCACTACTTTGACTCCTACGTACTATCCGAATCAAGCCTTTTTGTGTACCCCACAAAGATTATCATAAAAACATGTGGGACCACCAAGTTGTTGAAATCCATCCGTCCATTGCTTCATCACGCAAACCAAATGGGGCTCACCTTGATGAGGTGTATGTACACCCGCGGTAGCTTTATCTTTCCCAAATCACAGCCTTACCCTCACAATAGTTTCAAGGATGAAGTCGTTTATTTGGAAGAAACTTTGCCTTCAAATTTGTGTGATAGAAAGGCCTCTGTTTTGCCTTCTAAATTTTTGGCACACAAGTGGCACGTGTTCTCCGCACGTGACGTTTCCTATCACGTGCCCCACGTGCTCTACACGCTGGAGGTTTGCATGACGGAGCTGGACCGGGTGCTCGCCCGGAAGTTCTTCCGCCGCCCCGACGACGGGAAAACAGGCGACACTGCCGGAAAAGAGATGTCTGAGGCGACGGGGATTAACGGAATTAATCCCAATGCTCTTATTTGTGACTTTGCTTTTGATCCGTGCGGGTACTCCATGAACGGAATAGACGGAGACCGTTACTCTACCATCCACGTCACCCCGGAGGACGGGTTTAGTTACGCGAGTTTCGAGTGCGTGGGGTCCACTTACGAGGACCTTGATGACGTGGCCAAGTTCTTGAGGAAGGTGGTGCAAGTTTTCCGGCCCGGGACCATGTCCGTATCCACCACGTGCTTGAGTCCCGAGGTTTGGACACGTGTCGCTAAGGGAGTGGAGCCACTTGGAATGAAGTGCCGGAGTTGCACCATGGACGAGTTTCCAGCAGCCGGGACAGTCGTGTTTCAAACGTTTACCGCTCGCCGGAAATGA

Network for GWHGAAZE012124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01536.17	SAM_decarbox	5	332	4.80E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01611	speD, AMD1	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006597	biological_process	spermine biosynthetic process
GO:0008295	biological_process	spermidine biosynthetic process
GO:0004014	molecular_function	adenosylmethionine decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.475
	SRR3591706	second leaf	0.857
	SRR3591707	mature leaf	0.226
	SRR3591708	Shoot apex	5.531
	SRR3591709	Stem	1.988
	SRR3591710	White floral bud	0.639
	SRR3591711	White flower	0.865
	SRR3591712	Green floral bud	0.704
	SRR3591713	Yellow flower	0.440
SRP173429	SRR8316895	Juvenile bud stage	0.697
	SRR8316896	Juvenile bud stage	0.600
	SRR8316897	Juvenile bud stage	0.159
	SRR8316894	Third green stage	0.233
	SRR8316900	Third green stage	1.007
	SRR8316901	Third green stage	0.438
	SRR8316898	Complete white stage	0.094
	SRR8316899	Complete white stage	0.353
	SRR8316903	Complete white stage	0.474
	SRR8316902	Silver flowering stage	0.076
	SRR8316904	Silver flowering stage	0.122
	SRR8316905	Silver flowering stage	0.038
	SRR8316906	Gold flowering stage	0.510
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.390
SRP132670	SRR6706286	Control	0.804
	SRR6706287	Light intensity 50%	0.700
	SRR6706288	Light intensity 20%	0.351
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.506
	CNS0095593	Slightly white alabastrum(diploid) 2	1.942
	CNS0095594	Slightly white alabastrum(diploid) 3	2.437
	CNS0095595	Whole white alabastrum(diploid) 2	0.982
	CNS0095596	Whole white alabastrum(diploid) 3	0.343
	CNS0095597	Whole white alabastrum(diploid) 4	0.783
	CNS0095598	Silvery flower (diploied) 1	1.515
	CNS0095599	Silvery flower (diploied) 2	1.072
	CNS0095600	Silvery flower (diploied) 3	0.710
	CNS0095601	Golden flower (diploid) 1	0.259
	CNS0095602	Golden flower (diploid) 2	0.575
	CNS0095603	Golden flower (diploid) 3	0.526
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.981
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.445
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.574
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.504
	CNS0095610	Silvery flower (tetraploid) 1	0.830
	CNS0095611	Silvery flower (tetraploid) 2	1.095
	CNS0095612	Silvery flower (tetraploid) 3	0.618
	CNS0095613	Golden flower (tetraploid) 1	0.668
	CNS0095614	Golden flower (tetraploid) 2	0.341
	CNS0095615	Golden flower (tetraploid) 3	0.774
CRA001975	CRR073297	Stem 1	4.533
	CRR073298	Stem 2	3.468
	CRR073299	Stem 3	9.442
	CRR073300	Leaf 1	0.571
	CRR073301	Leaf 2	1.058
	CRR073302	Leaf 3	1.798
	CRR073303	Juvenile bud 1	0.398
	CRR073304	Juvenile bud 2	0.156
	CRR073305	Juvenile bud 3	0.833
	CRR073306	Third green 1	0.471
	CRR073307	Third green 2	0.722
	CRR073308	Third green 3	2.798
	CRR073309	Second white 1	0.455
	CRR073310	Second white 2	0.414
	CRR073311	Second white 3	0.809
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.699
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	1.420
	CRR073318	Tawny withering 1	1.121
	CRR073319	Tawny withering 2	0.425
	CRR073320	Tawny withering 3	0.818