Gene detail

Detail information of GWHGAAZE012127

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI26150.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q42910\|PPDK_MESCR	Pyruvate, phosphate dikinase, chloroplastic (Precursor)
trEMBL	tr\|M5XXT0\|M5XXT0_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26558.1}
TAIR10	AT4G15530.6	pyruvate orthophosphate dikinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80633847	80645029	+
GWHAAZE00000003	mRNA	80633847	80645029	+
GWHAAZE00000003	exon	80633847	80634152	+
GWHAAZE00000003	exon	80637212	80637268	+
GWHAAZE00000003	exon	80638501	80638734	+
GWHAAZE00000003	exon	80638819	80638956	+
GWHAAZE00000003	exon	80639217	80639379	+
GWHAAZE00000003	exon	80639754	80639989	+
GWHAAZE00000003	exon	80640094	80640222	+
GWHAAZE00000003	exon	80640405	80640584	+
GWHAAZE00000003	exon	80640952	80641089	+
GWHAAZE00000003	exon	80641332	80641496	+
GWHAAZE00000003	exon	80641575	80641736	+
GWHAAZE00000003	exon	80641829	80641918	+
GWHAAZE00000003	exon	80642113	80642251	+
GWHAAZE00000003	exon	80642503	80642680	+
GWHAAZE00000003	exon	80643217	80643352	+
GWHAAZE00000003	exon	80643511	80643639	+
GWHAAZE00000003	exon	80643826	80643963	+
GWHAAZE00000003	exon	80644790	80644881	+
GWHAAZE00000003	exon	80644987	80645029	+
GWHAAZE00000003	CDS	80633847	80634152	+
GWHAAZE00000003	CDS	80637212	80637268	+
GWHAAZE00000003	CDS	80638501	80638734	+
GWHAAZE00000003	CDS	80638819	80638956	+
GWHAAZE00000003	CDS	80639217	80639379	+
GWHAAZE00000003	CDS	80639754	80639989	+
GWHAAZE00000003	CDS	80640094	80640222	+
GWHAAZE00000003	CDS	80640405	80640584	+
GWHAAZE00000003	CDS	80640952	80641089	+
GWHAAZE00000003	CDS	80641332	80641496	+
GWHAAZE00000003	CDS	80641575	80641736	+
GWHAAZE00000003	CDS	80641829	80641918	+
GWHAAZE00000003	CDS	80642113	80642251	+
GWHAAZE00000003	CDS	80642503	80642680	+
GWHAAZE00000003	CDS	80643217	80643352	+
GWHAAZE00000003	CDS	80643511	80643639	+
GWHAAZE00000003	CDS	80643826	80643963	+
GWHAAZE00000003	CDS	80644790	80644881	+
GWHAAZE00000003	CDS	80644987	80645029	+

Transcript Sequence
>GWHTAAZE012139 ATGGCTTCGTCATCGGTGAAAGGATTGATTATGAGGTCTAACGTGAAGGATATGTGCTCATGGAAACTAATGAAGCGAAAGTATGGAGAGAATATTGATCTTCTTAGAGCGATTCGTCGTTCGATTCACGTGAGCCAACGGCGTTCCGGTAAGGGTCGAGTAATTTGTTGCAAGGAGTCGCATGCCAATGCGCATGGTTTCACGAGTCCAATACCTAAGAGGTCTGAGCCACCGGTTGGGGAACGGACCGGCCGATCGCAAGCTATCCTCTCCCCTGTATCCGACCCCAAGACAACTGCCAAAAAGAGAGTTTTCACTTTTGGCAAAGGAAAGAGTGAAGGAAATAAGGGCATGAAGTCTTTGTTAGGAGGCAAAGGGGCAAACCTGGCTGAAATGGCAACCATTGGATTATCAGTGCCGCCTGGGCTCACCATATCAACAGAAGCCTGCCAAGAGTATCAGCAAACTGGCAAAAGGCTGCCTGAAGAATTGTGGGAAGAGATATTGGCAGGCTTAGAGATTGTGGAGAAGGAGATGGGTTCAATCCTTGGTGACCCATCTAAACCTCTCCTTCTCTCTGTTCGATCTGGTGCTGCAATTTCAATGCCTGGGATGATGGACACTGTTCTTAATCTTGGACTCAATGATGAAGTTGTTGCTGGTTTGGCTGCAAAAAGTGGAGAGCGATTTGCGTATGATTCATACAGACGGTTTCTAGACATGTTTGGAAATGTTGTGATGGGCATTCCACACTCCTTATTTGAGGAAAAGTTAGAAAGGTTGAAAGCTGCAAAAGGACTTAAGGTTGACACTGAGCTACCAGCTTCTGATCTTAAGGATCTTGTAGAGCAATACAAGAATGTCTACCTCGAAGCTAAGGGTGAAAAGTTTCCTTCAGATCCAAGGAAACAATTGCAGCTGGCCGTTAATGCAGTTTTTGATTCTTGGGACAGTCCGAGGGCCAATAAGTACCGTAGCATCAATCAAATAACTGGGTTAAAGGGAACTGCTGTAAACATTCAATGCATGGTATTTGGTAACATGGGAAACACTTCAGGGACAGGTGTTCTCTTCACTAGGAACCCTAGCACTGGTGAAAAGAAGCTCTATGGGGAGTTTCTGGTCAATGCTCAGGGAGAGGATGTTGTTGCTGGAATTAGAACACCAGAGGACTTGGACACCATGAAAAATTGCATGCCTGAAGCTTACAAAGAACTTGTGGAGAATTGTGAAATCTTAGAGCAACATTACAAAGATATGATGGACATTGAATTCACTGTTCAAGAAAACAGGCTATGGATGTTGCAATGTCGATCAGGCAAACGTACAGGTAAAGGTGCAGTAAAAATTGCTGTAGACATGGTCAATGAAGGGCTTGTTGATTCTCGCACTGCAGTTAAGATGGTTGAACCACAGCATCTCGATCAACTTCTTCATCCACAGTTTGAGGATCCTTCTGCTTACAAAGAGAAAGTTGTAGCCACGGGATTGCCTGCATCACCGGGAGCAGCAATAGGGCAGGTTGTTTTCAGCGCTGAAGATGCTGAAGCATGGCATGCACAAGGGAAGAGCGCCATCTTGGTAAGGACAGAAACCAGTCCAGAGGATGTCGGTGGTATGCATGCTGCTGCTGGAATCTTGACATCTAGAGGTGGCATGACGTCTCATGCAGCTGTGGTGGCCCGTGGGTGGGGCAAATGCTGTGTTTCTGGTTGTGCTGATGTTCGTGTAAACGATGCTGAGAAGGTTGTGGTGATTGGAGACAAGGTGATTAATGAAGGGGAATGGCTTTCACTCAACGGGTCTACTGGGGAGGTGATCTTGGGTAAACAACCACTGGCTCCTCCGGCTTTGAGTGGGGATCTTGAGATATTCATGTCTTGGGCTGATGAAATTAGAATTCTCAAGGTTATGGCTAATGCTGATACGCCTGAAGATGCACTAGCAGCACGAAAGAATGGTGCACAAGGGATTGGACTTTGTAGGACAGAGCACATGTTCTTTGCTTCTGATGAGAGGATAAAAGCTGTTAGGCAGATGATAATGGCAGTTACTACTGAACAGAGGAAGGCAGCCCTGGATCTGTTGTTGCCTTATCAAAGATCCGACTTCGAGGGAATATTCCGTGCAATGGATGGTCTTCCTGTAACAATCCGGCTTTTGGACCCTCCGCTCCATGAATTTCTACCAGAAGGTGACCTCGAACAAATCGTCAGTGAACTAACCTCGGAGACTGGCATGACTGAAGATGAAATTTACTTGAGGATTGAGAAATTATCAGAAGTAAACCCCATGCTTGGTTTCCGAGGCTGCAGGCTAGGAATATCATATCCAGAGCTAACAGAAATGCAAGTGTGCGCAATCTTTCAGGCTGCAGTGGCTATGAGCAACCAGAGTGTTAAAGTCATTCCAGAGATAATGGTTCCCCTTGTTGGAACACCTCAGGCACGAGAACTAGGACATCAAGTGAATTTAATTCACGGTGTAGCAAAAAAGGTTTTCTCACAGCTGGGATCCTCATTGAGCTATAAGGTGGGCACCATGATTGAGATTCCTAGAGCTGCTCTGGTTGCAGATGAGATTGCAAAGGAAGCAGAGTTCTTCTCCTTTGGGACAAATGACCTGACACAAATGACATTTGGGTACAGTAGAGATGATGTTGGCAAGTTTCTCCCGATTTACATATCCAAAGGCATTCTCCAAAGTGATCCATTTGAGGTTGGAATATGTGGAGAGCATGGTGGGGAGCCTTCTTCTGTTGCATTCTTTGCTGAGGCTGGATTGGATTATGTTTCTTGTTCTCCATTCAGGGTGCCTATTGCTAGGCTAGCTGCAGCTCAAGTTGTTGCATAA

Network for GWHGAAZE012127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01326.20	PPDK_N	120	392	1.70E-36
PF01326.20	PPDK_N	402	457	2.40E-12
PF00391.24	PEP-utilizers	523	604	2.40E-25
PF02896.19	PEP-utilizers_C	618	948	1.60E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01006	ppdK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0016310	biological_process	phosphorylation
GO:0006090	biological_process	pyruvate metabolic process
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups
GO:0050242	molecular_function	pyruvate, phosphate dikinase activity
GO:0003824	molecular_function	catalytic activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.285
	SRR3591706	second leaf	90.541
	SRR3591707	mature leaf	375.114
	SRR3591708	Shoot apex	20.399
	SRR3591709	Stem	12.045
	SRR3591710	White floral bud	3.784
	SRR3591711	White flower	1.822
	SRR3591712	Green floral bud	5.022
	SRR3591713	Yellow flower	0.408
SRP173429	SRR8316895	Juvenile bud stage	9.658
	SRR8316896	Juvenile bud stage	11.619
	SRR8316897	Juvenile bud stage	6.507
	SRR8316894	Third green stage	4.734
	SRR8316900	Third green stage	8.283
	SRR8316901	Third green stage	7.462
	SRR8316898	Complete white stage	0.831
	SRR8316899	Complete white stage	6.377
	SRR8316903	Complete white stage	3.433
	SRR8316902	Silver flowering stage	0.255
	SRR8316904	Silver flowering stage	0.637
	SRR8316905	Silver flowering stage	0.449
	SRR8316906	Gold flowering stage	1.231
	SRR8316907	Gold flowering stage	0.625
	SRR8316908	Gold flowering stage	0.789
SRP132670	SRR6706286	Control	6.963
	SRR6706287	Light intensity 50%	8.018
	SRR6706288	Light intensity 20%	8.691
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.522
	CNS0095593	Slightly white alabastrum(diploid) 2	4.270
	CNS0095594	Slightly white alabastrum(diploid) 3	3.564
	CNS0095595	Whole white alabastrum(diploid) 2	3.862
	CNS0095596	Whole white alabastrum(diploid) 3	1.813
	CNS0095597	Whole white alabastrum(diploid) 4	2.606
	CNS0095598	Silvery flower (diploied) 1	7.971
	CNS0095599	Silvery flower (diploied) 2	6.731
	CNS0095600	Silvery flower (diploied) 3	3.792
	CNS0095601	Golden flower (diploid) 1	9.996
	CNS0095602	Golden flower (diploid) 2	7.612
	CNS0095603	Golden flower (diploid) 3	6.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.652
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.282
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.846
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.895
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.957
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.042
	CNS0095610	Silvery flower (tetraploid) 1	6.261
	CNS0095611	Silvery flower (tetraploid) 2	2.333
	CNS0095612	Silvery flower (tetraploid) 3	3.130
	CNS0095613	Golden flower (tetraploid) 1	1.681
	CNS0095614	Golden flower (tetraploid) 2	5.897
	CNS0095615	Golden flower (tetraploid) 3	1.726
CRA001975	CRR073297	Stem 1	9.844
	CRR073298	Stem 2	7.891
	CRR073299	Stem 3	8.515
	CRR073300	Leaf 1	5.853
	CRR073301	Leaf 2	5.096
	CRR073302	Leaf 3	5.771
	CRR073303	Juvenile bud 1	6.613
	CRR073304	Juvenile bud 2	3.565
	CRR073305	Juvenile bud 3	5.801
	CRR073306	Third green 1	0.547
	CRR073307	Third green 2	0.375
	CRR073308	Third green 3	1.029
	CRR073309	Second white 1	0.620
	CRR073310	Second white 2	0.960
	CRR073311	Second white 3	0.470
	CRR073312	Silver flowering 1	0.813
	CRR073313	Silver flowering 2	0.675
	CRR073314	Silver flowering 3	1.145
	CRR073315	Gold flowering 1	17.125
	CRR073316	Gold flowering 2	22.742
	CRR073317	Gold flowering 3	11.084
	CRR073318	Tawny withering 1	0.991
	CRR073319	Tawny withering 2	1.056
	CRR073320	Tawny withering 3	0.748