Gene detail

Detail information of GWHGAAZE012138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009352182.1	0	PREDICTED: squamosa promoter-binding-like protein 7 [Pyrus x bretschneideri]
Swissprot	tr\|Q8S9G8\|SPL7_ARATH	0	Squamosa promoter-binding-like protein 7
trEMBL	tr\|A0A068TSI2\|A0A068TSI2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98939.1}
TAIR10	AT5G18830.2	2E-150	squamosa promoter binding protein-like 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80748407	80763157	-
GWHAAZE00000003	mRNA	80748407	80763157	-
GWHAAZE00000003	exon	80762682	80763157	-
GWHAAZE00000003	exon	80760298	80760473	-
GWHAAZE00000003	exon	80759371	80759570	-
GWHAAZE00000003	exon	80759224	80759298	-
GWHAAZE00000003	exon	80759009	80759116	-
GWHAAZE00000003	exon	80758604	80758718	-
GWHAAZE00000003	exon	80756380	80756515	-
GWHAAZE00000003	exon	80755408	80755555	-
GWHAAZE00000003	exon	80755011	80755213	-
GWHAAZE00000003	exon	80754657	80754855	-
GWHAAZE00000003	exon	80753894	80753993	-
GWHAAZE00000003	exon	80753722	80753793	-
GWHAAZE00000003	exon	80748407	80748465	-
GWHAAZE00000003	CDS	80762682	80763157	-
GWHAAZE00000003	CDS	80760298	80760473	-
GWHAAZE00000003	CDS	80759371	80759570	-
GWHAAZE00000003	CDS	80759224	80759298	-
GWHAAZE00000003	CDS	80759009	80759116	-
GWHAAZE00000003	CDS	80758604	80758718	-
GWHAAZE00000003	CDS	80756380	80756515	-
GWHAAZE00000003	CDS	80755408	80755555	-
GWHAAZE00000003	CDS	80755011	80755213	-
GWHAAZE00000003	CDS	80754657	80754855	-
GWHAAZE00000003	CDS	80753894	80753993	-
GWHAAZE00000003	CDS	80753722	80753793	-
GWHAAZE00000003	CDS	80748464	80748465	-
GWHAAZE00000003	three_prime_UTR	80748407	80748463	-

Transcript Sequence
>GWHTAAZE012150 ATGCACAATCCCCCTTCACCACCCCTCCCTCAAATGGATCCCCTCCCGGTCAACCCCTCACTCTCCCCTCCTCCCTTGGATTGGACCGACTTCCTCGATTTCGACGATCAATTCTCCATCCCTTTCGAATCTCATAGCACTCCAGATTTCCCTCCAATTCCAGCGAATTCTCCTCCTGATAATAGGGTCCGGAAACGGGACCCGAGGCTGGTGTGTTCCAACTTTTTAGCTGGTCGGGTCCCATGTGCGTGCCCGGAGCTCGATGCCACGGCCGACGAGGAAGAGAGCGGGCCCGGGAAGAAGCGGGCGAGGACTGTGAATGGGGGGATGGCGAGGTGTCAAGTGCCTGATTGTGGTGTTGATATTAGGGAGCTCAAAGGGTATCATAGGAGGCATAGGGTTTGTCTTCAGTGTGCCAACGCCAGTAATGTGGTTCTTGATGGGATGAATAAGAGATACTGTCAGCAGTGTGGCAAGTTTCACATCTTGTCTGATTTCGATGAAGGTAAACGTAGTTGTAGAAGAAAATTAGAGCGGCATAACAATAGACGGCGAAGAAAACCCATGGATTCCAAGGAGATTGTTGAGACAGAAGCTCAACAGGCCCTATCTTTTGATGATGATGGTGGTTGTGATAATGAAACTGGAAAAGAGAGCCAACCAGCAGAAGGGGGAACACTAGTGGAGTCTGACAGTCGCGTCTCTGTACTATGTTCCGCTGATGGTTCCCAAAATATCCACAGTGATAGTATTGTATCTATTACTGCTTCTGGTGAAACCGTAATCGAAGAAAAAGACAAACTCGCACATTCTCCTTCCTATTTGGATAATAAGAGCTCATTCTCTTCTATGTGTCCAACTGGTCGGATTTCATTCAAGCTATATGATTGGAACCCTGCGGAGTTCCCTCGACGGCTTCGGCACCAAATATTCCAATGGTTGGCGAGTATGCCCGTTGAACTGGAGGGATATATCCGTCCTGGCTGTACAATCTTGACCGTGTTCATTGCAATGCCAAAGTTTATGTGGGTCAAGTTATTTGAAGATCCTGTTGTATACATTCAAAACCTCGTGGCATCTGGAAAAATGCTCTCTGGAAGAGGCAACTTTCTTCTTTACCTAAATAACACGGTTTTCCATGTTATCAAAGATGGAACTTCGGTGATAAAATTGAAGGTGGAGGAACAGGCCCCGAAGCTTCACTATGTCCATCCTACATTCTTTGAGGCTGGCAAACCCATGGAGTTTGTTGCCTGTGGAAGTAATCTTCTCCAACCCAAATTTCGGTTTCTTTTGTCTTTTGCTGGGAAGTATCTGAAACATGAAGTTTGTGTCCAACCACCCTTTGACGCTACCACTAATCTGGATCATCAATTATTGAAGATTTATGTCCCTCATACGGAACGGAATCTTTTTGGCCCTGCATTCATTGAGGTTGAAAATGAGTCCGGCTTATCCAACTTCATTCCCATTCTCATAGGGGACAAAGAAATTTGTTCTGAAATGAAGACAATGCAGCAGAAAGTTTTTGCATCTCCATGTTCAAGAGGATCGAATTTTGCAGTGGCTAGTTCTTCGTGTGAAGCTTCTTTATTGAGACAAAAAGAGACCTCTGAATTTATTTTATATGTGGCATGCATGGCTACTGGTGTTGCTGATGATACTGATATGAGGCTGTGCCAGAGGAAAATAAATCACGCTCAAGATATCCTTTGTCAAAATTTACGGAAGAAAGTGAGTTCGGTAGTGCTTGTTAGTGATCTTGTGCCAAAAGAAGAAAATTTCAATCAAAGCTCTGAAAGTAACGTGCTCTCTGTTGTTCCTGTTACCAATCAAGATAGGGAGGTAATAGAGAGGAGGTTGGACGCAATGGTGGGTTTAGAATCCGCAAGCGTCCCACTTTTGAATAGAGATGTTGTTGTGCGTGTGAACCTTGTCTGCTTTGGAATATGTTCGGTTGTTCTCCATCCTCAGAAGGTTGGCCATTTAGCAACGACTATCCACAGGTGACAACTGAAGTCAGAACTTGGTTTTGGTGACACCAATAGCATTGTTCGTGAGGGTTGA

Network for GWHGAAZE012138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	113	187	5.10E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.559
	SRR3591706	second leaf	5.642
	SRR3591707	mature leaf	12.200
	SRR3591708	Shoot apex	6.648
	SRR3591709	Stem	14.288
	SRR3591710	White floral bud	17.468
	SRR3591711	White flower	20.955
	SRR3591712	Green floral bud	11.075
	SRR3591713	Yellow flower	18.456
SRP173429	SRR8316895	Juvenile bud stage	7.877
	SRR8316896	Juvenile bud stage	10.244
	SRR8316897	Juvenile bud stage	8.595
	SRR8316894	Third green stage	4.171
	SRR8316900	Third green stage	9.190
	SRR8316901	Third green stage	9.648
	SRR8316898	Complete white stage	5.104
	SRR8316899	Complete white stage	15.597
	SRR8316903	Complete white stage	11.696
	SRR8316902	Silver flowering stage	7.085
	SRR8316904	Silver flowering stage	9.581
	SRR8316905	Silver flowering stage	5.116
	SRR8316906	Gold flowering stage	15.932
	SRR8316907	Gold flowering stage	14.060
	SRR8316908	Gold flowering stage	22.013
SRP132670	SRR6706286	Control	8.186
	SRR6706287	Light intensity 50%	8.809
	SRR6706288	Light intensity 20%	9.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.247
	CNS0095593	Slightly white alabastrum(diploid) 2	3.949
	CNS0095594	Slightly white alabastrum(diploid) 3	5.633
	CNS0095595	Whole white alabastrum(diploid) 2	6.254
	CNS0095596	Whole white alabastrum(diploid) 3	5.225
	CNS0095597	Whole white alabastrum(diploid) 4	4.805
	CNS0095598	Silvery flower (diploied) 1	8.141
	CNS0095599	Silvery flower (diploied) 2	7.255
	CNS0095600	Silvery flower (diploied) 3	16.578
	CNS0095601	Golden flower (diploid) 1	9.570
	CNS0095602	Golden flower (diploid) 2	16.751
	CNS0095603	Golden flower (diploid) 3	16.886
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.089
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.170
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.306
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.963
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.000
	CNS0095610	Silvery flower (tetraploid) 1	20.333
	CNS0095611	Silvery flower (tetraploid) 2	20.517
	CNS0095612	Silvery flower (tetraploid) 3	21.222
	CNS0095613	Golden flower (tetraploid) 1	11.946
	CNS0095614	Golden flower (tetraploid) 2	18.405
	CNS0095615	Golden flower (tetraploid) 3	22.483
CRA001975	CRR073297	Stem 1	8.772
	CRR073298	Stem 2	8.224
	CRR073299	Stem 3	6.181
	CRR073300	Leaf 1	10.605
	CRR073301	Leaf 2	8.560
	CRR073302	Leaf 3	6.225
	CRR073303	Juvenile bud 1	5.118
	CRR073304	Juvenile bud 2	5.568
	CRR073305	Juvenile bud 3	9.630
	CRR073306	Third green 1	10.103
	CRR073307	Third green 2	6.687
	CRR073308	Third green 3	10.144
	CRR073309	Second white 1	5.898
	CRR073310	Second white 2	8.466
	CRR073311	Second white 3	8.883
	CRR073312	Silver flowering 1	8.549
	CRR073313	Silver flowering 2	7.618
	CRR073314	Silver flowering 3	7.864
	CRR073315	Gold flowering 1	3.648
	CRR073316	Gold flowering 2	9.975
	CRR073317	Gold flowering 3	6.662
	CRR073318	Tawny withering 1	9.068
	CRR073319	Tawny withering 2	9.666
	CRR073320	Tawny withering 3	8.784