Gene detail

Detail information of GWHGAAZE012144

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011034246.1	PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Populus euphratica]
Swissprot	tr\|O78328\|DXS_CAPAN	Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|K7NC02\|K7NC02_SIRGR	1-deoxyxylulose-5-phosphate synthase {ECO:0000313\|EMBL:AEM42997.1}
TAIR10	AT4G15560.1	Deoxyxylulose-5-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80847698	80851384	+
GWHAAZE00000003	mRNA	80847698	80851384	+
GWHAAZE00000003	exon	80847698	80847809	+
GWHAAZE00000003	exon	80848259	80848530	+
GWHAAZE00000003	exon	80848824	80849097	+
GWHAAZE00000003	exon	80849568	80849788	+
GWHAAZE00000003	exon	80850473	80850754	+
GWHAAZE00000003	exon	80850854	80851138	+
GWHAAZE00000003	exon	80851235	80851384	+
GWHAAZE00000003	CDS	80847698	80847809	+
GWHAAZE00000003	CDS	80848259	80848530	+
GWHAAZE00000003	CDS	80848824	80849097	+
GWHAAZE00000003	CDS	80849568	80849788	+
GWHAAZE00000003	CDS	80850473	80850754	+
GWHAAZE00000003	CDS	80850854	80851138	+
GWHAAZE00000003	CDS	80851235	80851384	+

Transcript Sequence
>GWHTAAZE012158 ATGCAGACAATGAGACAAACGAATGGGCTTGCGGGTTTCACTAAGCGCTCGGAGAGTGTATATGACTGTTTTGGAACTGGTCACAGTTCTACCACTATCTCAGCAGGCTTGGGAATGGCTGTGGGAAGAGATCTAAAGGGAGGAAAAAACAAGGTAGTTGCCATTATAGGTGATGGTGCAATGACAGCAGGCCAAGCTTACGAAGCTATGAACAATGCTGGTTACTTGGATTCTGACATGATTGTTATTCTTAATGACAATAAGCAAGTCTCTTTACCCACCGCAAGTCTAGACGGGCCCATACCACCTGTTGGAGCTTTGAGCAGTGCTCTTAGTAGGTTGCAATCAAACAGGCCTCTCCGCGAATTAAGAGAAGTTGCCAAGGGAGTTACCAAACAGATTGGTGGGCCCATGCATGAGCTAGCCTCAAAGGTTGACGAATATGCTCGTGGGCTGATCAGTGGTTCTGGATCAACACTTTTCGAAGAACTTGGATTATATTATATTGGTCCTGTTGATGGGCACAGCATAGATGATCTTGTTGCCATTTTGGAAGAAGTTAAGATTACTAAAACCACAGGTCCAGTCTTGATTCACGTGATCACCGAGAAAGGCCGAGGATACCCCTATGCTGAGAAAGCTGCTGACAAGTATCATGGAGTGACCAAGTTCGATCCAGCAACTGGAAAGCAATTCAAAGCCAGTGCCAAAACTCAGTCTTACACAACATACTTTGCCGAGGCTTTGATAGCCGAGGCAGAGGCAGATAAAGACGTGGTCGCTATCCATGCTGCAATGGGAGGTGGAACGGGATTAAACCTTTTCCTTCGCCGCTTCCCATCCCGTTGCTTTGATGTCGGTATAGCGGAACAGCACGCCGTAGTGCATGATGTGGATTTGCAGAAGCTGCCCGTGAGATTTGCAATGGACAGAGCTGGGCTGGTTGGGGCAGATGGCCCCACACATTGTGGGGCCTTTGATGTCACTTTTATGGCGTGCTTACCAAACATGGTAGTAATGGCTCCTTCTGATGAGGCAGAGCTTTTTCACATGGTTGCAACTGCTGCAGCTATAGATGACCGGCCTAGTTGTTTTCGGTATCCGAGAGGGAACGGGGTTGGTGTTCAGCTGCCAGTAGGGAACAAAGGCATTCCCCTTGAGGTTGGAAAAGGGAGGGTATTGATTGAAGGGGAGAGAGTTGCACTCTTGGGTTACGGTGCGGCGGTTCAGAGCTGTTTGGCTGCAGCCGCTTTAGTAGAAACCCACGGTTTACATTTAACGGTTGCGGATGCGCGTTTTTGCAAGCCGTTGGATCATGCTCTTATTCGGAGCTTGGCAAAATCACATGAGGTCTTGATCACAGTAGAAGAAGGGTCAATTGGGGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCTTGGATGGGCTTCTTGATGGCAAGATTAAGTGGAGACCGTTGGTTCTTCCTGATAGGTACATCGACCATGGATCACCGTCCGATCAACTGATCGAAGCTGGACTCACTCCTTCTCATATAGCAGCGACGGTATTCAATATACTCGGACAAACGAGAGAGGCTTTGAAGATCATGACCTAA

Network for GWHGAAZE012144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	1	202	6.70E-63
PF02779.25	Transket_pyr	292	371	4.60E-17
PF02780.21	Transketolase_C	389	512	1.70E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	114.927
	SRR3591706	second leaf	128.732
	SRR3591707	mature leaf	83.241
	SRR3591708	Shoot apex	112.892
	SRR3591709	Stem	63.348
	SRR3591710	White floral bud	45.502
	SRR3591711	White flower	143.580
	SRR3591712	Green floral bud	18.515
	SRR3591713	Yellow flower	170.819
SRP173429	SRR8316895	Juvenile bud stage	25.781
	SRR8316896	Juvenile bud stage	20.925
	SRR8316897	Juvenile bud stage	14.468
	SRR8316894	Third green stage	8.658
	SRR8316900	Third green stage	18.824
	SRR8316901	Third green stage	25.973
	SRR8316898	Complete white stage	40.836
	SRR8316899	Complete white stage	60.935
	SRR8316903	Complete white stage	67.911
	SRR8316902	Silver flowering stage	56.667
	SRR8316904	Silver flowering stage	75.204
	SRR8316905	Silver flowering stage	36.692
	SRR8316906	Gold flowering stage	133.774
	SRR8316907	Gold flowering stage	126.400
	SRR8316908	Gold flowering stage	149.762
SRP132670	SRR6706286	Control	24.745
	SRR6706287	Light intensity 50%	20.402
	SRR6706288	Light intensity 20%	16.458
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.854
	CNS0095593	Slightly white alabastrum(diploid) 2	19.553
	CNS0095594	Slightly white alabastrum(diploid) 3	17.466
	CNS0095595	Whole white alabastrum(diploid) 2	11.367
	CNS0095596	Whole white alabastrum(diploid) 3	10.909
	CNS0095597	Whole white alabastrum(diploid) 4	15.617
	CNS0095598	Silvery flower (diploied) 1	73.669
	CNS0095599	Silvery flower (diploied) 2	50.274
	CNS0095600	Silvery flower (diploied) 3	108.465
	CNS0095601	Golden flower (diploid) 1	56.803
	CNS0095602	Golden flower (diploid) 2	95.668
	CNS0095603	Golden flower (diploid) 3	94.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.235
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.233
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.069
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.634
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.499
	CNS0095610	Silvery flower (tetraploid) 1	181.634
	CNS0095611	Silvery flower (tetraploid) 2	115.947
	CNS0095612	Silvery flower (tetraploid) 3	96.627
	CNS0095613	Golden flower (tetraploid) 1	56.036
	CNS0095614	Golden flower (tetraploid) 2	131.186
	CNS0095615	Golden flower (tetraploid) 3	79.355
CRA001975	CRR073297	Stem 1	35.818
	CRR073298	Stem 2	32.793
	CRR073299	Stem 3	39.485
	CRR073300	Leaf 1	25.501
	CRR073301	Leaf 2	32.887
	CRR073302	Leaf 3	15.971
	CRR073303	Juvenile bud 1	23.350
	CRR073304	Juvenile bud 2	28.145
	CRR073305	Juvenile bud 3	38.440
	CRR073306	Third green 1	83.245
	CRR073307	Third green 2	77.425
	CRR073308	Third green 3	90.479
	CRR073309	Second white 1	104.089
	CRR073310	Second white 2	66.610
	CRR073311	Second white 3	70.559
	CRR073312	Silver flowering 1	131.186
	CRR073313	Silver flowering 2	166.123
	CRR073314	Silver flowering 3	138.896
	CRR073315	Gold flowering 1	22.817
	CRR073316	Gold flowering 2	25.834
	CRR073317	Gold flowering 3	21.219
	CRR073318	Tawny withering 1	18.030
	CRR073319	Tawny withering 2	19.495
	CRR073320	Tawny withering 3	17.536