Gene detail

Detail information of GWHGAAZE012173

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98915.1	7.2301E-110	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TRH4\|A0A068TRH4_COFCA	3E-110	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98915.1}
TAIR10	AT4G15563.1	3E-36	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81214192	81218135	-
GWHAAZE00000003	mRNA	81214192	81218135	-
GWHAAZE00000003	exon	81214192	81214467	-
GWHAAZE00000003	exon	81216853	81217101	-
GWHAAZE00000003	exon	81217801	81217980	-
GWHAAZE00000003	exon	81218064	81218135	-
GWHAAZE00000003	CDS	81218064	81218135	-
GWHAAZE00000003	CDS	81217801	81217980	-
GWHAAZE00000003	CDS	81216853	81217101	-
GWHAAZE00000003	CDS	81214192	81214467	-

Transcript Sequence
>GWHTAAZE012187 ATGAATCAGTCGCAGTGTATATACAACTCTTTACCCGACGATATTGCCTTCAAAATCACCTCCTCTCTTCAGGTACCAGATATTTGTTCGTTGGGAAGTTGCTCTAGGTTTTGGAGGGAGCTGTGCGAGTCGGATTGTGTGTGGGCGTCTCTATGTAGAGACAGGTGGCCAGCCCTTGATTTGGATTATCAAGATTCTGCTCCTCAATTTGAAAACCCTTTGCTTGATCAACACTTGGACTCCACCTTGAAGGGGTGGAGGGGCTTTTACATCAGCAAACACTATGATATAATGGTTAAAGCTGCCACTATAGTTGATTTTGCAAAACAATATTGGTCCTCCGAATCAATTGAAGCGAGGAATTATTTGTCAGCCATTGAAGATCTGTGCTCTATGCAACTTGGATTTAAAGATGTCCAAATGTTCTTTCTAAAGCCGCAGCTCAGTGTGCTTCTCAACTTGGTTGGCTTGCACTACTGCGTTAGCTGGCTTGGAGTTCCGGGTGACCTTGTGATGGAAGTACTAAGTAGGTGCAACATATCAGAACGGCAAGTATGTGTCCAATGGTGGAAGCTAGGCCGGTGGTCCAATGGGTTCCGAATGAGGGATGAGGTACACTCTCGTCGGGTGTCTATGGGAGATCTTGCAATGGCAAAACAAGAGGAAGTTCTTGGGGTGCTTCACCGAGGTGCGGTCCACGAGGTGCTACGTGTCCAAATATCTTCTGCTAAACCAAAACGCACTCCTTGGTCGTGCCAAAGCGCTCTATCTTGGTAA

Network for GWHGAAZE012173

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	10	53	1.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.317
	SRR3591706	second leaf	8.429
	SRR3591707	mature leaf	13.469
	SRR3591708	Shoot apex	13.878
	SRR3591709	Stem	29.576
	SRR3591710	White floral bud	48.773
	SRR3591711	White flower	66.964
	SRR3591712	Green floral bud	22.720
	SRR3591713	Yellow flower	72.732
SRP173429	SRR8316895	Juvenile bud stage	6.270
	SRR8316896	Juvenile bud stage	11.958
	SRR8316897	Juvenile bud stage	5.783
	SRR8316894	Third green stage	4.213
	SRR8316900	Third green stage	11.832
	SRR8316901	Third green stage	15.499
	SRR8316898	Complete white stage	27.160
	SRR8316899	Complete white stage	32.144
	SRR8316903	Complete white stage	34.774
	SRR8316902	Silver flowering stage	50.977
	SRR8316904	Silver flowering stage	65.458
	SRR8316905	Silver flowering stage	32.915
	SRR8316906	Gold flowering stage	120.912
	SRR8316907	Gold flowering stage	105.010
	SRR8316908	Gold flowering stage	131.661
SRP132670	SRR6706286	Control	17.409
	SRR6706287	Light intensity 50%	20.645
	SRR6706288	Light intensity 20%	19.283
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.247
	CNS0095593	Slightly white alabastrum(diploid) 2	8.704
	CNS0095594	Slightly white alabastrum(diploid) 3	12.710
	CNS0095595	Whole white alabastrum(diploid) 2	9.493
	CNS0095596	Whole white alabastrum(diploid) 3	9.565
	CNS0095597	Whole white alabastrum(diploid) 4	12.623
	CNS0095598	Silvery flower (diploied) 1	26.503
	CNS0095599	Silvery flower (diploied) 2	21.693
	CNS0095600	Silvery flower (diploied) 3	57.289
	CNS0095601	Golden flower (diploid) 1	26.057
	CNS0095602	Golden flower (diploid) 2	43.765
	CNS0095603	Golden flower (diploid) 3	43.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.518
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.972
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.681
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.242
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.547
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.191
	CNS0095610	Silvery flower (tetraploid) 1	60.354
	CNS0095611	Silvery flower (tetraploid) 2	74.583
	CNS0095612	Silvery flower (tetraploid) 3	169.567
	CNS0095613	Golden flower (tetraploid) 1	76.955
	CNS0095614	Golden flower (tetraploid) 2	66.095
	CNS0095615	Golden flower (tetraploid) 3	182.534
CRA001975	CRR073297	Stem 1	13.658
	CRR073298	Stem 2	15.733
	CRR073299	Stem 3	16.965
	CRR073300	Leaf 1	18.132
	CRR073301	Leaf 2	14.990
	CRR073302	Leaf 3	13.940
	CRR073303	Juvenile bud 1	14.355
	CRR073304	Juvenile bud 2	20.733
	CRR073305	Juvenile bud 3	19.829
	CRR073306	Third green 1	115.054
	CRR073307	Third green 2	102.810
	CRR073308	Third green 3	105.009
	CRR073309	Second white 1	156.899
	CRR073310	Second white 2	148.331
	CRR073311	Second white 3	127.834
	CRR073312	Silver flowering 1	121.033
	CRR073313	Silver flowering 2	124.573
	CRR073314	Silver flowering 3	96.110
	CRR073315	Gold flowering 1	12.701
	CRR073316	Gold flowering 2	17.953
	CRR073317	Gold flowering 3	11.698
	CRR073318	Tawny withering 1	10.826
	CRR073319	Tawny withering 2	18.913
	CRR073320	Tawny withering 3	10.582