Gene detail

Detail information of GWHGAAZE012176

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275787.1	PREDICTED: putative chromatin-remodeling complex ATPase chain [Vitis vinifera]
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|D7T6I2\|D7T6I2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26103.3}
TAIR10	AT3G06400.2	chromatin-remodeling protein 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81276720	81286687	+
GWHAAZE00000003	mRNA	81276720	81286687	+
GWHAAZE00000003	exon	81276720	81277042	+
GWHAAZE00000003	exon	81278226	81278357	+
GWHAAZE00000003	exon	81278510	81278616	+
GWHAAZE00000003	exon	81279551	81279663	+
GWHAAZE00000003	exon	81280462	81280559	+
GWHAAZE00000003	exon	81280675	81280854	+
GWHAAZE00000003	exon	81280947	81281168	+
GWHAAZE00000003	exon	81281608	81281742	+
GWHAAZE00000003	exon	81281826	81282108	+
GWHAAZE00000003	exon	81282202	81282275	+
GWHAAZE00000003	exon	81282477	81282697	+
GWHAAZE00000003	exon	81283068	81283155	+
GWHAAZE00000003	exon	81283239	81283332	+
GWHAAZE00000003	exon	81283429	81283617	+
GWHAAZE00000003	exon	81283709	81283740	+
GWHAAZE00000003	exon	81283862	81283938	+
GWHAAZE00000003	exon	81284031	81284120	+
GWHAAZE00000003	exon	81284210	81284279	+
GWHAAZE00000003	exon	81284409	81284463	+
GWHAAZE00000003	exon	81284550	81284608	+
GWHAAZE00000003	exon	81284685	81284850	+
GWHAAZE00000003	exon	81285054	81285232	+
GWHAAZE00000003	exon	81285338	81285361	+
GWHAAZE00000003	exon	81285435	81285554	+
GWHAAZE00000003	exon	81286456	81286563	+
GWHAAZE00000003	exon	81286670	81286687	+
GWHAAZE00000003	five_prime_UTR	81276720	81276838	+
GWHAAZE00000003	CDS	81276839	81277042	+
GWHAAZE00000003	CDS	81278226	81278357	+
GWHAAZE00000003	CDS	81278510	81278616	+
GWHAAZE00000003	CDS	81279551	81279663	+
GWHAAZE00000003	CDS	81280462	81280559	+
GWHAAZE00000003	CDS	81280675	81280854	+
GWHAAZE00000003	CDS	81280947	81281168	+
GWHAAZE00000003	CDS	81281608	81281742	+
GWHAAZE00000003	CDS	81281826	81282108	+
GWHAAZE00000003	CDS	81282202	81282275	+
GWHAAZE00000003	CDS	81282477	81282697	+
GWHAAZE00000003	CDS	81283068	81283155	+
GWHAAZE00000003	CDS	81283239	81283332	+
GWHAAZE00000003	CDS	81283429	81283617	+
GWHAAZE00000003	CDS	81283709	81283740	+
GWHAAZE00000003	CDS	81283862	81283938	+
GWHAAZE00000003	CDS	81284031	81284120	+
GWHAAZE00000003	CDS	81284210	81284279	+
GWHAAZE00000003	CDS	81284409	81284463	+
GWHAAZE00000003	CDS	81284550	81284608	+
GWHAAZE00000003	CDS	81284685	81284850	+
GWHAAZE00000003	CDS	81285054	81285232	+
GWHAAZE00000003	CDS	81285338	81285361	+
GWHAAZE00000003	CDS	81285435	81285554	+
GWHAAZE00000003	CDS	81286456	81286563	+
GWHAAZE00000003	CDS	81286670	81286687	+

Transcript Sequence
>GWHTAAZE012190 GTAAATACCCGCTAACATACTCGCTCTTAAATTCTTACGTGTGGTGTTAAGTCGGTGTATCGTTACTAATCTCCTCTCTACTCTCCGATTGAAACCCGCGAAGAGCTTCGAGATTAACCATGGCGAAACGCTCGAAATCCAAGGATTCATCGGACGAATCTCTATCCAACGGCTCCAATTCGTCAGAGGAAGAGCGGATCAACGAATCAACGGTGAACGAAGAGGAAGACGAGGAGGAGATAGAGGCCGTCGCTAGGACGGTTGATTCAGACGAGGATGACGGTGATACCGCCGTCGTTGACCAGGAGGAAGACGAAAACGAGAATGGAATTGCAGTGCCTAACGGTGAAATTAGCCAGCGTGAAAAGGCTAGGCTAAAGGAAATGCAAAGGCTGAAGAGGCAGAAGGTACAAGAAATATTGGATGCACAGAATGCTGCTATTGAGGCTGATATGAACAACAAAGGAAAAGGTCGCTTAAAGTATCTATTGCAGCAAACAGAGTTATTTGCTCATTTCGCCAAAGGTGACCAATCGTCATCTCAGAAGAAGACGAAGGGAAGTGGTCGTCATGCATCTAAGTTAACTGAAGAGGAGGAAGATGAGGAATGTCTCAAGGAGGAAGAAGATGGTCTTTCTGGAACAGGAAACACAAGGCTTTTGGTACAACCCTCATGCATACAGGGTAAGATGAGGGATTACCAACTTGCTGGCTTAAATTGGCTCATTCGACTGTATGAGAATGGTATAAATGGAATCCTTGCAGATGAAATGGGGCTTGGTAAAACTCTGCAAACCATATCCTTGCTTGGTTATTTGCACGAATTTAGAGGAATTACTGGTCCTCACATGGTTGTTGCTCCAAAATCCACACTTGGCAACTGGATGAATGAGATTCGACGTTTTTGCCCAACTTTACGTGCTGTAAAATTTCTTGGAAATCCTGAGGAGAGGAGATACACACGCGAAGAGTTACTTGTTGCAGGGAAATTTGATGTTTGTGTCACCAGTTTTGAAATGGCAATCAAAGAGAAGACTGCCTTGCGCCGTTTTAGCTGGCGATATATTGTAATTGATGAAGCTCATCGAATAAAAAATGAGAACTCTCTTTTGTCAAAAACTATGAGGCTTTATAACACTAATTACCGCCTTCTTATTACGGGAACGCCACTTCAGAACAATCTTCATGAACTCTGGTCTCTTCTGAACTTTCTACTGCCAGAGATATTTAGCTCAGCAGAAACTTTTGATGAGTGGTTTCAGATTTCTGGTGAAAATGACCAGCAGGAGGTTGTTCAACAGCTTCACAAGGTTCTCCGACCCTTCCTCCTCCGAAGGTTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCTAAGAAGGAAACAATACTCAAAGTTGGTATGTCTCAAATGCAGAAACAGTATTATAAGGCATTATTACAGAAAGATCTTGAGGTTGTGAATGCTGGTGGAGAGCGCAAGCGCCTCCTGAATATTGCAATGCAGCTCCGTAAATGCTGTAATCACCCATACCTTTTTCAAGGTGCTGAACCTGGCCCTCCCTATACCACAGGAGATCATCTTGTTACAAATGCAGGCAAAATGGTTCTTCTGGATAAGTTGCTCCCAAAACTGAAGGAGCGTGATTCCAGGGTCCTGATTTTCTCACAGATGACAAGACTACTGGACATTCTTGAAGACTACTTAATGTACCGTGGATATCTGTATTGTCGGATTGACGGGAACACTGGCGGTGAAGATCGTGATGCTTCTATTGATGCATTTAATAAGCCAGGAAGTGAGAAATTTGTTTTCTTATTATCAACTAGAGCTGGAGGCCTCGGTATCAATCTTGCAACTGCAGATGTTGTCATTCTTTATGACAGTGACTGGAATCCGCAAGTTGATTTGCAGGCTCAGGACCGTGCTCATAGGATTGGGCAAAAGAAAGAAGTTCAAGTTTTCCGCTTCTGCACCGAGTATACTATTGAGGAGAAAGTGATTGAGAGAGCTTATAAAAAGCTTGCACTTGATGCTTTGGTTATCCAACAAGGACGACTTGCAGAGCAGAAGACTGTTAACAAAGATGATCTACTGCAAATGGTGAGGTTTGGTGCTGAAATGGTTTTCAGTTCCAAGGACAGCACAATTACAGACGAGGATATAGATAGGATCATTGCTAAAGGAGAAGAAGCAACGGCTGAGCTTGATGCCAAGATGAAGAAATTTACGGAAGATGCCATCAAATTTAAAATGGATGATACTGCTGACCTGTATGATTTTGATGACGAAAAGGATGAAGGCAAGTTTGATTTTAAGAAGATTGTCAGTGAAAATTGGGTAGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCGGAATCAGAATACTTCAAGCAAACAATGCGCCAAAGTGGTCCGGCTAGGCAAAAAGAGCCTCGAATTCCTCGCATGCCCCAGCTGCATGACTTCCAGTTCTTCAATACACAAAGGCTTACTGAACTGTATGAAAAAGAAGTACGCCATCTCATGCAAGCACATCAAAAGAATCAGTTAAAAGACACAATAGAGGTTGATGAACCAGAAGACCTGGGAGACCCTTTGACTGCAGAAGAGCAGGAAGAGAAAGAGCAGCTACTGGAAGAGGGGTTTTCAACATGGACTAGGAGAGACTTCAATACTTTCATCCGGGCTTGTGAGAAGTATGGTCGGAATGACATACAAAGTATTGCTTCTGAAATGGAAGGAAAAACAGATGAAGAAGTTGAAAGATATGCAAAAGTTTTCAAAGAAAGATATAAAGAGCTAAATGATTATGATCGGATCATCAAGAATATTGAAAGAGGCGAGGCTAGAATTTCCAGGAAAGATGAGATCATGAAAGCAATTGGGAAAAAACTGGATCGTTACAAGAATCCTTGGCTGGAATTGAAGATCCAATATGGTCAGAACAAAGGAAAGTTGTACAATGAAGAGTGTGATCGTTTTATGATATGCATGATTCACAAACTTCGGTCTCGAACAACTCAAGAACTTGCAAGAAGATGTGATACACTCATTCGGTTGGTTGAGAGGGAAAACCAAGAATATGATGAGAGGGAGAGACAGGCCCGTAAAGAGAAGAAGCTTGCTAAGCAGAATGCTACACCTCAAAAGCGTTCAATTACACGGCAGGTTGCAGAAAGCTCTCCTCCCTCTTCGAAGAAACGGAAACAATTATCTATGGATGACTACATGATCTCGGGAAAGAAGAGGAAATAA

Network for GWHGAAZE012176

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	204	471	2.30E-72
PF00271.32	Helicase_C	494	606	1.20E-18
PF09110.12	HAND	755	837	6.20E-06
PF09111.11	SLIDE	899	962	3.20E-18

Protein Sequence

>GWHPAAZE012183
MAKRSKSKDSSDESLSNGSNSSEEERINESTVNEEEDEEEIEAVARTVDSDEDDGDTAVVDQEEDENENGIAVPNGEISQREKARLKEMQRLKRQKVQEILDAQNAAIEADMNNKGKGRLKYLLQQTELFAHFAKGDQSSSQKKTKGSGRHASKLTEEEEDEECLKEEEDGLSGTGNTRLLVQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPTLRAVKFLGNPEERRYTREELLVAGKFDVCVTSFEMAIKEKTALRRFSWRYIVIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTADLYDFDDEKDEGKFDFKKIVSENWVEPPKRERKRNYSESEYFKQTMRQSGPARQKEPRIPRMPQLHDFQFFNTQRLTELYEKEVRHLMQAHQKNQLKDTIEVDEPEDLGDPLTAEEQEEKEQLLEEGFSTWTRRDFNTFIRACEKYGRNDIQSIASEMEGKTDEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLRSRTTQELARRCDTLIRLVERENQEYDERERQARKEKKLAKQNATPQKRSITRQVAESSPPSSKKRKQLSMDDYMISGKKRK

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006338	biological_process	chromatin remodeling
GO:0043044	biological_process	ATP-dependent chromatin remodeling
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding
GO:0016818	molecular_function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031491	molecular_function	nucleosome binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.381
	SRR3591706	second leaf	34.169
	SRR3591707	mature leaf	35.822
	SRR3591708	Shoot apex	46.111
	SRR3591709	Stem	38.944
	SRR3591710	White floral bud	50.698
	SRR3591711	White flower	52.704
	SRR3591712	Green floral bud	35.165
	SRR3591713	Yellow flower	59.973
SRP173429	SRR8316895	Juvenile bud stage	28.131
	SRR8316896	Juvenile bud stage	34.392
	SRR8316897	Juvenile bud stage	15.184
	SRR8316894	Third green stage	13.863
	SRR8316900	Third green stage	26.329
	SRR8316901	Third green stage	26.183
	SRR8316898	Complete white stage	13.364
	SRR8316899	Complete white stage	32.840
	SRR8316903	Complete white stage	29.983
	SRR8316902	Silver flowering stage	15.077
	SRR8316904	Silver flowering stage	24.212
	SRR8316905	Silver flowering stage	11.185
	SRR8316906	Gold flowering stage	37.809
	SRR8316907	Gold flowering stage	31.870
	SRR8316908	Gold flowering stage	34.954
SRP132670	SRR6706286	Control	28.727
	SRR6706287	Light intensity 50%	28.725
	SRR6706288	Light intensity 20%	28.504
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.567
	CNS0095593	Slightly white alabastrum(diploid) 2	16.639
	CNS0095594	Slightly white alabastrum(diploid) 3	14.971
	CNS0095595	Whole white alabastrum(diploid) 2	13.811
	CNS0095596	Whole white alabastrum(diploid) 3	10.679
	CNS0095597	Whole white alabastrum(diploid) 4	12.575
	CNS0095598	Silvery flower (diploied) 1	27.966
	CNS0095599	Silvery flower (diploied) 2	25.425
	CNS0095600	Silvery flower (diploied) 3	33.569
	CNS0095601	Golden flower (diploid) 1	26.818
	CNS0095602	Golden flower (diploid) 2	39.277
	CNS0095603	Golden flower (diploid) 3	38.147
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.460
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.058
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.775
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.128
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.334
	CNS0095610	Silvery flower (tetraploid) 1	49.029
	CNS0095611	Silvery flower (tetraploid) 2	47.682
	CNS0095612	Silvery flower (tetraploid) 3	41.973
	CNS0095613	Golden flower (tetraploid) 1	32.172
	CNS0095614	Golden flower (tetraploid) 2	42.622
	CNS0095615	Golden flower (tetraploid) 3	36.656
CRA001975	CRR073297	Stem 1	52.972
	CRR073298	Stem 2	42.606
	CRR073299	Stem 3	40.269
	CRR073300	Leaf 1	33.882
	CRR073301	Leaf 2	29.276
	CRR073302	Leaf 3	22.654
	CRR073303	Juvenile bud 1	21.678
	CRR073304	Juvenile bud 2	20.101
	CRR073305	Juvenile bud 3	28.779
	CRR073306	Third green 1	8.670
	CRR073307	Third green 2	6.699
	CRR073308	Third green 3	10.730
	CRR073309	Second white 1	8.816
	CRR073310	Second white 2	18.387
	CRR073311	Second white 3	17.446
	CRR073312	Silver flowering 1	12.481
	CRR073313	Silver flowering 2	11.674
	CRR073314	Silver flowering 3	12.897
	CRR073315	Gold flowering 1	13.091
	CRR073316	Gold flowering 2	25.577
	CRR073317	Gold flowering 3	7.798
	CRR073318	Tawny withering 1	24.406
	CRR073319	Tawny withering 2	18.857
	CRR073320	Tawny withering 3	21.541