Gene detail

Detail information of GWHGAAZE012177

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007223158.1	4.8427E-128	hypothetical protein PRUPE_ppa004394mg [Prunus persica]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	7E-61	Serine/threonine-protein kinase PBS1
trEMBL	tr\|M5XE17\|M5XE17_PRUPE	2E-128	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24357.1}
TAIR10	AT5G18610.2	8E-84	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81289167	81293620	-
GWHAAZE00000003	mRNA	81289167	81293620	-
GWHAAZE00000003	exon	81293527	81293620	-
GWHAAZE00000003	exon	81292720	81292913	-
GWHAAZE00000003	exon	81292425	81292614	-
GWHAAZE00000003	exon	81290495	81290550	-
GWHAAZE00000003	exon	81289167	81289796	-
GWHAAZE00000003	CDS	81293527	81293620	-
GWHAAZE00000003	CDS	81292720	81292913	-
GWHAAZE00000003	CDS	81292425	81292614	-
GWHAAZE00000003	CDS	81290495	81290550	-
GWHAAZE00000003	CDS	81289167	81289796	-

Transcript Sequence
>GWHTAAZE012191 GAAGAAAAAAATGGCGTGAAAGAAGTAGTGAAGAAGGATTCTGTAAAGGATGGTTCAGTTGCTCAGCCTCACCGTGTGAGTAGAGTTAGCTCAGACAAGAAATCTCGGGGTTTTGATCTTAAGAGGGAACCCAGTGTTCAAAAAGATGGAGGAACGGCCCATATTGCTGCACAGACGTTTACATTTCGTGAGCTTGCCGCTGCTACCAAGAACTTTAGGCCAGAATGTTTACTGGGTGAAGGTGGATTTGGACGTGTTTACAAAGGCCGCTTAGAAAACACAGGACAGGTGGTAGCTGTAAAGCAACTTGATCGAAATGGTCTTCAAGGGAATAGAGAGTTTCTGGTGGAGGTTCTCATGCTTAGCCTCTTACACCATGATAACCTAGTCAACTTGATTGGTTATTGTGCTGATGGTGACCAACGACTCCTTGTGTACGAGTTTATGCCATTGGGATCTCTGGAGGATCATTTACATGGGCGTAAGGCTATTGATAATACCAGGGCTCCAGGAGAGCATAATCTTGTTGCATGGGCACGCCCACTTTTCAAGGACCGCAGGAAGTTCCCCAAAATGGCCGATCCACTTTTGCAAGGCCGATATCCAATGCGAGGACTTTACCAAGCGCTTGCAGTTGCGGCCATGTGTTTGCAAGAACAAGCTGCCACAAGACCTCTAATTGGCGATGTTGTGACCGCTTTGTCATATTTAGCCTCCCAAACTTATGACCCAAATTCGGCTTCCACCCAAAGTAACAGGATCGGCCCGTCAGCTCCTAGGGGCAGCAAGGATGACCGTAGGACCATGGCTGATGGACCGGATAGCCCGGATGAACCTGGACGTGGGGCTTGCTACAGCTCCCCTTCAACCCATAAGAACTCGCCTGATTACAGGAAGAGAGATTCTATGAGGGAATTTAATGGCCGAGATTTGGGAAATGGTGAAATCAACGGCGGGTCTGGGAGGAGATGGGGTTTGGATGAATTAGAGCATCAAAATTCTCAAAGGGATAGCCCTGTGGGTGCAGGGAGAGCTAGAGAAATGCCGAGGAACCGAGATGTAGATAGAGAACGGGCGGTGGCAGAGGCAAAGGTTTGGGGAGAGAATTGGAGAGAGAAAAAGAGGTCAAATGCAATGGGTAGCTTTGACTCCACAAACGAGTAA

Network for GWHGAAZE012177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	77	211	4.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.790
	SRR3591706	second leaf	18.160
	SRR3591707	mature leaf	29.430
	SRR3591708	Shoot apex	24.743
	SRR3591709	Stem	34.988
	SRR3591710	White floral bud	26.963
	SRR3591711	White flower	37.838
	SRR3591712	Green floral bud	25.270
	SRR3591713	Yellow flower	25.076
SRP173429	SRR8316895	Juvenile bud stage	13.084
	SRR8316896	Juvenile bud stage	14.762
	SRR8316897	Juvenile bud stage	6.917
	SRR8316894	Third green stage	7.261
	SRR8316900	Third green stage	20.901
	SRR8316901	Third green stage	21.282
	SRR8316898	Complete white stage	12.468
	SRR8316899	Complete white stage	42.941
	SRR8316903	Complete white stage	18.300
	SRR8316902	Silver flowering stage	14.961
	SRR8316904	Silver flowering stage	16.948
	SRR8316905	Silver flowering stage	10.136
	SRR8316906	Gold flowering stage	36.725
	SRR8316907	Gold flowering stage	37.682
	SRR8316908	Gold flowering stage	33.104
SRP132670	SRR6706286	Control	29.292
	SRR6706287	Light intensity 50%	30.619
	SRR6706288	Light intensity 20%	31.903
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.649
	CNS0095593	Slightly white alabastrum(diploid) 2	13.500
	CNS0095594	Slightly white alabastrum(diploid) 3	9.717
	CNS0095595	Whole white alabastrum(diploid) 2	11.728
	CNS0095596	Whole white alabastrum(diploid) 3	11.420
	CNS0095597	Whole white alabastrum(diploid) 4	11.508
	CNS0095598	Silvery flower (diploied) 1	16.695
	CNS0095599	Silvery flower (diploied) 2	14.940
	CNS0095600	Silvery flower (diploied) 3	26.487
	CNS0095601	Golden flower (diploid) 1	14.999
	CNS0095602	Golden flower (diploid) 2	27.692
	CNS0095603	Golden flower (diploid) 3	22.917
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.046
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.643
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.866
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.824
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.941
	CNS0095610	Silvery flower (tetraploid) 1	32.170
	CNS0095611	Silvery flower (tetraploid) 2	27.504
	CNS0095612	Silvery flower (tetraploid) 3	33.317
	CNS0095613	Golden flower (tetraploid) 1	19.924
	CNS0095614	Golden flower (tetraploid) 2	26.649
	CNS0095615	Golden flower (tetraploid) 3	25.696
CRA001975	CRR073297	Stem 1	30.302
	CRR073298	Stem 2	30.075
	CRR073299	Stem 3	34.706
	CRR073300	Leaf 1	35.237
	CRR073301	Leaf 2	31.660
	CRR073302	Leaf 3	23.972
	CRR073303	Juvenile bud 1	30.346
	CRR073304	Juvenile bud 2	32.059
	CRR073305	Juvenile bud 3	47.705
	CRR073306	Third green 1	38.123
	CRR073307	Third green 2	24.037
	CRR073308	Third green 3	32.508
	CRR073309	Second white 1	62.388
	CRR073310	Second white 2	67.251
	CRR073311	Second white 3	78.034
	CRR073312	Silver flowering 1	57.964
	CRR073313	Silver flowering 2	61.074
	CRR073314	Silver flowering 3	40.769
	CRR073315	Gold flowering 1	22.509
	CRR073316	Gold flowering 2	30.031
	CRR073317	Gold flowering 3	24.229
	CRR073318	Tawny withering 1	34.736
	CRR073319	Tawny withering 2	24.989
	CRR073320	Tawny withering 3	28.993