Detail information of GWHGAAZE012183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006342757.10PREDICTED: zinc finger CCCH domain-containing protein 58-like [Solanum tuberosum]
Swissprottr|Q84W91|C3H32_ARATH9E-155Zinc finger CCCH domain-containing protein 32
trEMBLtr|M1C2H3|M1C2H3_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400058323}
TAIR10AT5G18550.12E-116Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8142890481440355-
GWHAAZE00000003mRNA8142890481440355-
GWHAAZE00000003exon8144020981440355-
GWHAAZE00000003exon8143995081440099-
GWHAAZE00000003exon8143959381439658-
GWHAAZE00000003exon8143917981439298-
GWHAAZE00000003exon8143875681439082-
GWHAAZE00000003exon8143803381438347-
GWHAAZE00000003exon8142890481429317-
GWHAAZE00000003CDS8144020981440355-
GWHAAZE00000003CDS8143995081440099-
GWHAAZE00000003CDS8143959381439658-
GWHAAZE00000003CDS8143917981439298-
GWHAAZE00000003CDS8143875681439082-
GWHAAZE00000003CDS8143803381438347-
GWHAAZE00000003CDS8142890481429317-
Transcript Sequence

Network for GWHGAAZE012183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.25zf-CCCH70951.20E-09
PF00642.25zf-CCCH1171411.30E-08
PF00642.25zf-CCCH1621872.20E-08
PF00642.25zf-CCCH3303543.80E-07
PF00642.25zf-CCCH3774018.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.873
SRR3591706second leaf6.681
SRR3591707mature leaf3.838
SRR3591708Shoot apex7.711
SRR3591709Stem6.824
SRR3591710White floral bud11.408
SRR3591711White flower10.060
SRR3591712Green floral bud27.371
SRR3591713Yellow flower4.074
SRP173429 SRR8316895Juvenile bud stage 9.327
SRR8316896Juvenile bud stage 10.049
SRR8316897Juvenile bud stage 4.488
SRR8316894Third green stage 7.662
SRR8316900Third green stage 26.679
SRR8316901Third green stage 26.770
SRR8316898Complete white stage 4.919
SRR8316899Complete white stage 26.619
SRR8316903Complete white stage 6.982
SRR8316902Silver flowering stage2.412
SRR8316904Silver flowering stage3.547
SRR8316905Silver flowering stage1.517
SRR8316906Gold flowering stage 3.191
SRR8316907Gold flowering stage 3.372
SRR8316908Gold flowering stage 5.524
SRP132670SRR6706286Control29.853
SRR6706287Light intensity 50%33.356
SRR6706288Light intensity 20%38.791
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.096
CNS0095593Slightly white alabastrum(diploid) 27.133
CNS0095594Slightly white alabastrum(diploid) 36.198
CNS0095595Whole white alabastrum(diploid) 28.813
CNS0095596Whole white alabastrum(diploid) 39.475
CNS0095597Whole white alabastrum(diploid) 410.060
CNS0095598Silvery flower (diploied) 14.266
CNS0095599Silvery flower (diploied) 23.698
CNS0095600Silvery flower (diploied) 37.143
CNS0095601Golden flower (diploid) 13.302
CNS0095602Golden flower (diploid) 25.159
CNS0095603Golden flower (diploid) 33.902
CNS0095604Slightly white alabastrum(tetraploid) 19.323
CNS0095605Slightly white alabastrum(tetraploid) 29.197
CNS0095606Slightly white alabastrum(tetraploid) 315.396
CNS0095607Whole white alabastrum(tetraploid) 17.185
CNS0095608Whole white alabastrum(tetraploid) 26.798
CNS0095609Whole white alabastrum(tetraploid) 316.337
CNS0095610Silvery flower (tetraploid) 14.393
CNS0095611Silvery flower (tetraploid) 25.762
CNS0095612Silvery flower (tetraploid) 36.552
CNS0095613Golden flower (tetraploid) 10.773
CNS0095614Golden flower (tetraploid) 24.257
CNS0095615Golden flower (tetraploid) 31.217
CRA001975CRR073297Stem 126.152
CRR073298Stem 220.621
CRR073299Stem 322.828
CRR073300Leaf 134.854
CRR073301Leaf 230.160
CRR073302Leaf 327.678
CRR073303Juvenile bud 122.386
CRR073304Juvenile bud 222.390
CRR073305Juvenile bud 329.481
CRR073306Third green 14.242
CRR073307Third green 23.950
CRR073308Third green 35.141
CRR073309Second white 15.232
CRR073310Second white 22.214
CRR073311Second white 32.483
CRR073312Silver flowering 12.646
CRR073313Silver flowering 22.767
CRR073314Silver flowering 32.789
CRR073315Gold flowering 12.227
CRR073316Gold flowering 22.357
CRR073317Gold flowering 32.741
CRR073318Tawny withering 112.072
CRR073319Tawny withering 28.283
CRR073320Tawny withering 313.402