Gene detail

Detail information of GWHGAAZE012184

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274845.1	3.8218E-135	PREDICTED: uncharacterized protein LOC100252802 [Vitis vinifera]
trEMBL	tr\|F6HDG3\|F6HDG3_VITVI	2E-135	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50333.1}
TAIR10	AT5G07900.1	1E-81	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81451484	81452644	+
GWHAAZE00000003	mRNA	81451484	81452644	+
GWHAAZE00000003	exon	81451484	81452644	+
GWHAAZE00000003	CDS	81451484	81452644	+

Transcript Sequence
>GWHTAAZE012198 ATGTTTAATCTCATCTGCAGAATTTTCCCCAACATTAGGGCTAATAATGTTAGAACTTCACCCCTTCACAAAAGGTTATACATTCAACACCACCCATTATCTTCATCACCATCACCAACTGTCAAATCGTTCTCAAGTGAACACTCATTCACTATCTCCTACCTCATAAATTCATGTGGGTTTACTCAAGAAAAAGCCCTCGCAGCTTCAAAGTATGTTAACTTTGAAAACCCAGCAAGAGTGGATTCAGTTCTTGTCTTTTTCAAGAAACATGGATTTACTCAAAACCAGATCTCAATTCTTGTCCAGAGGTTCCCTCCAGTCCTTTTATGTGATCCTGAGAAAACCCTTTTGCCCAAAATTAAGTTTCTCTATTCTGTAGGCCTATCTAATAAAGAGCTTACCAAGATACTAACTGGTGCACCAAGTATTTTGAAGAGAAGTTTGGATAAACAAATCATCCCAACTTTCAATTTCTTAAAAAGTTTGGTACAATCGAATGAAAAAGCCGTCAACGCCATTAAACGCTTTGCCACGCTTTTGAGTTACGATCTTCAAACCCGTATGGCACCAAATATTAAAACTTTGAAGCAATTCGGTGTGCCTGAATCAAATATTATGGTTTTGTTGACTTACCAACCTAGAGCATTCATGGTAGACACTGATAAATTTAGAAAGACCGCGGAGGAAGTGAAGGAAATGGGGTTTGATCCTATGAGAATGAAGTTTGTACTGGCAATTCACGCACTTAGGGCAATGACTAGACCGACTTGGGAAAAGAAAGTGGAGGCTTACAAGAAGTGGGGTTGGTCCGAAGATGAGATTTTGGTCGCTTTTGGGAAGCACCCATTTTGTATGATGGCATCTGAGGATAAAATTTTGGGGATAATGGAGTTTCTTGTCAACAAAATGGGTTGGGAGTCTTCGGTTCTCGCGAAAAGACCAGGGCTGATGACACTGAGCCTGTCTAAGAGGATTATTCCAAGGTGTTCGGTTTACGAAGTTATGTTGTCAAAAGGTTTGATCAAGAAGAAATATAGCTTGGTTAGGTTGTTGGAATGCCCTGAAAAGCAATTTGTCGATAATATTAGTAAGTCCTATGAGGAGGAAGCTCCTGAGTTGTTGAAACTATATCAAGAAAAGTTGGATTTTTCAAAGTGA

Network for GWHGAAZE012184

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	85	293	7.70E-32
PF02536.15	mTERF	180	359	3.60E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.118
	SRR3591706	second leaf	3.618
	SRR3591707	mature leaf	4.617
	SRR3591708	Shoot apex	7.116
	SRR3591709	Stem	4.536
	SRR3591710	White floral bud	3.472
	SRR3591711	White flower	6.764
	SRR3591712	Green floral bud	6.613
	SRR3591713	Yellow flower	4.629
SRP173429	SRR8316895	Juvenile bud stage	3.891
	SRR8316896	Juvenile bud stage	5.128
	SRR8316897	Juvenile bud stage	1.877
	SRR8316894	Third green stage	2.106
	SRR8316900	Third green stage	5.054
	SRR8316901	Third green stage	5.878
	SRR8316898	Complete white stage	1.261
	SRR8316899	Complete white stage	6.418
	SRR8316903	Complete white stage	2.671
	SRR8316902	Silver flowering stage	1.601
	SRR8316904	Silver flowering stage	2.848
	SRR8316905	Silver flowering stage	0.910
	SRR8316906	Gold flowering stage	3.913
	SRR8316907	Gold flowering stage	2.610
	SRR8316908	Gold flowering stage	3.598
SRP132670	SRR6706286	Control	2.776
	SRR6706287	Light intensity 50%	3.825
	SRR6706288	Light intensity 20%	3.882
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.147
	CNS0095593	Slightly white alabastrum(diploid) 2	3.762
	CNS0095594	Slightly white alabastrum(diploid) 3	3.931
	CNS0095595	Whole white alabastrum(diploid) 2	3.882
	CNS0095596	Whole white alabastrum(diploid) 3	3.297
	CNS0095597	Whole white alabastrum(diploid) 4	2.053
	CNS0095598	Silvery flower (diploied) 1	3.305
	CNS0095599	Silvery flower (diploied) 2	3.199
	CNS0095600	Silvery flower (diploied) 3	3.688
	CNS0095601	Golden flower (diploid) 1	2.124
	CNS0095602	Golden flower (diploid) 2	4.049
	CNS0095603	Golden flower (diploid) 3	4.504
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.537
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.594
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.911
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.782
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.941
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.763
	CNS0095610	Silvery flower (tetraploid) 1	3.280
	CNS0095611	Silvery flower (tetraploid) 2	4.737
	CNS0095612	Silvery flower (tetraploid) 3	2.529
	CNS0095613	Golden flower (tetraploid) 1	2.082
	CNS0095614	Golden flower (tetraploid) 2	2.505
	CNS0095615	Golden flower (tetraploid) 3	1.805
CRA001975	CRR073297	Stem 1	3.891
	CRR073298	Stem 2	3.186
	CRR073299	Stem 3	3.700
	CRR073300	Leaf 1	2.997
	CRR073301	Leaf 2	2.249
	CRR073302	Leaf 3	2.736
	CRR073303	Juvenile bud 1	2.076
	CRR073304	Juvenile bud 2	1.532
	CRR073305	Juvenile bud 3	1.586
	CRR073306	Third green 1	0.432
	CRR073307	Third green 2	0.238
	CRR073308	Third green 3	0.292
	CRR073309	Second white 1	0.635
	CRR073310	Second white 2	0.666
	CRR073311	Second white 3	0.280
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.216
	CRR073315	Gold flowering 1	2.283
	CRR073316	Gold flowering 2	1.228
	CRR073317	Gold flowering 3	0.649
	CRR073318	Tawny withering 1	1.424
	CRR073319	Tawny withering 2	0.470
	CRR073320	Tawny withering 3	2.577