Gene detail

Detail information of GWHGAAZE012188

Functional Annotation

Database	Orthologs	Annotation
Nr	KDO75173.1	hypothetical protein CISIN_1g003927mg [Citrus sinensis]
Swissprot	tr\|Q94AH6\|CUL1_ARATH	Cullin-1
trEMBL	tr\|A0A067G6F8\|A0A067G6F8_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO75173.1}
TAIR10	AT4G02570.4	cullin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81491573	81501908	-
GWHAAZE00000003	mRNA	81491573	81501908	-
GWHAAZE00000003	exon	81501775	81501908	-
GWHAAZE00000003	exon	81498857	81499073	-
GWHAAZE00000003	exon	81498623	81498670	-
GWHAAZE00000003	exon	81498342	81498545	-
GWHAAZE00000003	exon	81498180	81498257	-
GWHAAZE00000003	exon	81497914	81498003	-
GWHAAZE00000003	exon	81497511	81497591	-
GWHAAZE00000003	exon	81497373	81497435	-
GWHAAZE00000003	exon	81493956	81493991	-
GWHAAZE00000003	exon	81493793	81493879	-
GWHAAZE00000003	exon	81493546	81493695	-
GWHAAZE00000003	exon	81493403	81493458	-
GWHAAZE00000003	exon	81493205	81493325	-
GWHAAZE00000003	exon	81492449	81492610	-
GWHAAZE00000003	exon	81492196	81492339	-
GWHAAZE00000003	exon	81491865	81492083	-
GWHAAZE00000003	exon	81491573	81491773	-
GWHAAZE00000003	CDS	81501775	81501908	-
GWHAAZE00000003	CDS	81498857	81499073	-
GWHAAZE00000003	CDS	81498623	81498670	-
GWHAAZE00000003	CDS	81498342	81498545	-
GWHAAZE00000003	CDS	81498180	81498257	-
GWHAAZE00000003	CDS	81497914	81498003	-
GWHAAZE00000003	CDS	81497511	81497591	-
GWHAAZE00000003	CDS	81497373	81497435	-
GWHAAZE00000003	CDS	81493956	81493991	-
GWHAAZE00000003	CDS	81493793	81493879	-
GWHAAZE00000003	CDS	81493546	81493695	-
GWHAAZE00000003	CDS	81493403	81493458	-
GWHAAZE00000003	CDS	81493205	81493325	-
GWHAAZE00000003	CDS	81492449	81492610	-
GWHAAZE00000003	CDS	81492196	81492339	-
GWHAAZE00000003	CDS	81491865	81492083	-
GWHAAZE00000003	CDS	81491573	81491773	-

Transcript Sequence
>GWHTAAZE012202 ATGAATGAGCGCAAGACAATCGACTTAGAGCAAGGATGGGACTTTATGCAGAAAGGCATTACAAAGCTAAAGAACATCCTAGAAGGTCTTCCCGAGCCCCAGTTCAGTTCAGAGGACTACATGATGCTCTACACCTTGACTTTAATGTTCTGGTTTTTGATTCAGGTATTGCCATCTTTAAGAGAGAAGCATGATGAGTTCATGCTCAGAGAGCTTGTGAAAAGATGGTTAAATCATAAAGTTATGGTCAGGTGGCTTTCTCGTTTCTTTCACTATCTTGACCGCTACTTTATTGCTCGAAGGTCACTTCCTGGACTAAATGAAGTTGGACTCTCTTGCTTCCGTGATCTGGTCTACCAGGAAATAAATGGGAAAGTAAGGGCTGCCGTAATATCTCTGATTGATCAAGAGCGTGAGGGAGAGCAGATTGACCGAGCTTTACTGAAGAACGTTCTAGATATATTTGTTGAAATAGGAATGGGGCAAATGGATTATTACGAGAATGACTTTGAAGCAGAAATGCTCACAGATACAGGGGCCTATTATTCGCGGAAGGCTTCAAGCTGGATTCTGGAAGATTCTTGTCCAGATTACATGTTGAAAGCAGAGGAGTGTTTGAAACGGGAGAAGGACAGGGTTTCTCATTATCTTCATTTTAGTAGTGAGCCAAAATTGCTTGAGAAAGTTCAAAATCAGTTGCTTTCTGTGTATGCAACCCAATTGCTTGAGAAGGAGCACTCCGGGTGCCATGCACTGCTTAGGGATGACAAGGTGGAGGATTTGTCAAGGATGTATAGGCTATTTTCCAAAATACCTCGAGGCTTAGATCCTGTTTCTAATATATTTAAGCAGCACGTTACAGCTGAAGGTACAGCCTTGGTTAAACAAGCAGAGGATGCAGCAAGCAACAAGAAGGCAGATAAGAAAGATGTGGTCGGTTTGCAAGAACAGGTTTTTGTTAGAAAAGTGATTGAGCTCCATGACAAGTACCTGGCATACGTAAATGACTGCTTTATGAACCATACTCTATTCCATAAGGCTCTTAAGGAGGCTTTTGAAATCTTCTGCAACAAGGGTGTTGCCGGAAGCTCAAGTGCGGAATTACTCGCCACATTTTGTGATAATATTCTTAAAAAAGGTGGGAGTGAGAAATTGAGTGATGAAGCCATTGAGGAGACGCTTGAGAAGGTAGTGAAGCTGCTTGCCTACATTAGTGATAAAGACCTATTCGCTGAATTTTACAGGAAAAAGCTTGCTAGGCGGCTTCTGTTTGACAAGAGTGCTAATGATGAACATGAGAGAAGTATTCTGACAAAGCTAAAGCAGCAATGTGGTGGTCAGTTCACCTCAAAGATGGAGGGAATGGTTACAGATTTGACATTGGCGAAGGAAAATCAATCCAACTTCGAAGAGTACCTCAACGGTAATCCACATATAAATCCTGGAATTGACTTGACCGTTACTGTTCTGACTACTGGCTTTTGGCCAAGTTACAAGTCCTTTGATCTCAACCTTCCACTAGAGATGGTCAAATGCGTTGAAGTTTTCCGGGAATTCTACCAAACAAAAACAAAGCACAGGAAACTTACATGGATATATTCATTGGGTACTTGTAACATCAATGGAAAGTTTGATGCCAAAACAACAGAGCTGATTGTGACAACTTACCAGGCTTCTGCTCTGCTGCTATTCAATTCCTCAGATAGATTGAGTTATCAGGAGATTGTGAGTCAGTTAAACTTGTCCGATGATGATGTTGTTAGACTACTCCATTCCCTTTCATGTGCGAAGTATAAGATACTTCTTAAAGAGCCAAGCACTAAAACAATCTCTCCTAGTGATTACTTCGAGTTCAACTCCAAGTTCACCGACAAAATGAGGAGGATCAAGATACCTCTCCCTCCCGTGGATGAGAAGAAAAAGGTAATTGAAGATGTTGACAAGGACAGGCGGTACGCTATCGATGCCTCGATTGTGCGTATAATGAAGAGTCGGAAAGTTTTGGGCTATCAACAGCTGGTCATGGAGTGTGTTGAACAATTGGGCCGCATGTTCAAGGTATCTTTCTACCATGCCTTTTGTTCTATTTGA

Network for GWHGAAZE012188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.23	Cullin	59	622	1.20E-169
PF10557.10	Cullin_Nedd8	649	688	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0031625	molecular_function	ubiquitin protein ligase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.458
	SRR3591706	second leaf	32.101
	SRR3591707	mature leaf	48.029
	SRR3591708	Shoot apex	47.894
	SRR3591709	Stem	59.152
	SRR3591710	White floral bud	65.067
	SRR3591711	White flower	68.337
	SRR3591712	Green floral bud	56.742
	SRR3591713	Yellow flower	66.897
SRP173429	SRR8316895	Juvenile bud stage	29.896
	SRR8316896	Juvenile bud stage	46.104
	SRR8316897	Juvenile bud stage	21.234
	SRR8316894	Third green stage	20.863
	SRR8316900	Third green stage	50.281
	SRR8316901	Third green stage	48.454
	SRR8316898	Complete white stage	25.867
	SRR8316899	Complete white stage	70.103
	SRR8316903	Complete white stage	46.623
	SRR8316902	Silver flowering stage	30.401
	SRR8316904	Silver flowering stage	46.737
	SRR8316905	Silver flowering stage	20.750
	SRR8316906	Gold flowering stage	70.396
	SRR8316907	Gold flowering stage	64.017
	SRR8316908	Gold flowering stage	79.564
SRP132670	SRR6706286	Control	29.750
	SRR6706287	Light intensity 50%	32.631
	SRR6706288	Light intensity 20%	34.285
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.852
	CNS0095593	Slightly white alabastrum(diploid) 2	26.874
	CNS0095594	Slightly white alabastrum(diploid) 3	27.089
	CNS0095595	Whole white alabastrum(diploid) 2	24.121
	CNS0095596	Whole white alabastrum(diploid) 3	25.494
	CNS0095597	Whole white alabastrum(diploid) 4	23.502
	CNS0095598	Silvery flower (diploied) 1	27.973
	CNS0095599	Silvery flower (diploied) 2	26.699
	CNS0095600	Silvery flower (diploied) 3	67.647
	CNS0095601	Golden flower (diploid) 1	27.290
	CNS0095602	Golden flower (diploid) 2	58.462
	CNS0095603	Golden flower (diploid) 3	59.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.354
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.550
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.920
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.840
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.206
	CNS0095610	Silvery flower (tetraploid) 1	66.972
	CNS0095611	Silvery flower (tetraploid) 2	75.178
	CNS0095612	Silvery flower (tetraploid) 3	79.258
	CNS0095613	Golden flower (tetraploid) 1	37.249
	CNS0095614	Golden flower (tetraploid) 2	52.254
	CNS0095615	Golden flower (tetraploid) 3	72.761
CRA001975	CRR073297	Stem 1	44.849
	CRR073298	Stem 2	41.374
	CRR073299	Stem 3	39.374
	CRR073300	Leaf 1	43.989
	CRR073301	Leaf 2	35.312
	CRR073302	Leaf 3	33.757
	CRR073303	Juvenile bud 1	41.705
	CRR073304	Juvenile bud 2	33.226
	CRR073305	Juvenile bud 3	48.027
	CRR073306	Third green 1	23.312
	CRR073307	Third green 2	26.012
	CRR073308	Third green 3	29.141
	CRR073309	Second white 1	34.625
	CRR073310	Second white 2	48.091
	CRR073311	Second white 3	44.834
	CRR073312	Silver flowering 1	34.141
	CRR073313	Silver flowering 2	34.127
	CRR073314	Silver flowering 3	31.449
	CRR073315	Gold flowering 1	27.473
	CRR073316	Gold flowering 2	45.510
	CRR073317	Gold flowering 3	24.625
	CRR073318	Tawny withering 1	35.886
	CRR073319	Tawny withering 2	39.776
	CRR073320	Tawny withering 3	39.062