Gene detail

Detail information of GWHGAAZE012207

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271765.1	PREDICTED: kinesin-13A [Vitis vinifera]
Swissprot	tr\|Q940B8\|KIN13_ARATH	Kinesin-13A
trEMBL	tr\|D7T6C8\|D7T6C8_VITVI	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR10	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81730654	81739351	-
GWHAAZE00000003	mRNA	81730654	81739351	-
GWHAAZE00000003	exon	81739136	81739351	-
GWHAAZE00000003	exon	81738386	81738607	-
GWHAAZE00000003	exon	81738252	81738284	-
GWHAAZE00000003	exon	81737927	81738118	-
GWHAAZE00000003	exon	81736126	81736230	-
GWHAAZE00000003	exon	81735861	81735938	-
GWHAAZE00000003	exon	81734988	81735069	-
GWHAAZE00000003	exon	81734541	81734703	-
GWHAAZE00000003	exon	81733619	81733948	-
GWHAAZE00000003	exon	81732858	81733076	-
GWHAAZE00000003	exon	81731623	81732193	-
GWHAAZE00000003	exon	81731472	81731534	-
GWHAAZE00000003	exon	81730654	81730836	-
GWHAAZE00000003	CDS	81739136	81739351	-
GWHAAZE00000003	CDS	81738386	81738607	-
GWHAAZE00000003	CDS	81738252	81738284	-
GWHAAZE00000003	CDS	81737927	81738118	-
GWHAAZE00000003	CDS	81736126	81736230	-
GWHAAZE00000003	CDS	81735861	81735938	-
GWHAAZE00000003	CDS	81734988	81735069	-
GWHAAZE00000003	CDS	81734541	81734703	-
GWHAAZE00000003	CDS	81733619	81733948	-
GWHAAZE00000003	CDS	81732858	81733076	-
GWHAAZE00000003	CDS	81731623	81732193	-
GWHAAZE00000003	CDS	81731472	81731534	-
GWHAAZE00000003	CDS	81730654	81730836	-

Transcript Sequence
>GWHTAAZE012221 ATGGGTGGCCAGATGCAACAGAGCAATGCTGCTGCAGCAACTGCTCTGTACGATCAACCGGCAGCCACTGGGTCCTTGCTCAGTACAGTTCCCACTAGTGATGCTGGAGACGCCGTTATGACTCGGTGGCTCCAGTCTGCTGGATTGCAGCATCTGGCCTCACCCTTGGCTTCCACTGGCTATGATCATAGACTCCTGCCTAATCTCCTCATGCAGGGTTATGGAGCGGAATCTGCTGAAGAGAAGCAAAGGATTTTCAAATTAATGAGAAACCTCAACTTCGCTGGCGAGTCTGGTTCTGAGGCATACACCCCAACTGTACAAAGTTCAGCAGGGATGGCTGGCATGGGTGTTTTTTATTCTCCTGAAGTTAGAGGGGAATTTGGAGCTGGGCTTTTAGATCTGTATGCTATGGACGACACAGAACTTATATCTGAGTCGTCAGTTTTACAGTGGGAGTTGTTCTCTCATCATGTTGTTACAGAATTGTTTGAGCCATCGCCTTTTGTGCCAGCTGTCACGGAAGTATTTGACATTGACATTGATACGATGACCAGTCGGCAGCAAAGAGAGAAAACAGATATGCAGGCGTCATTTGGATTATCTACAAATGAAAAAGAAACAAATGCAAGGGAAAAAAATGTGGCCAAGATTAAAGTTGTGGTGCGTAAAAGACCTCTGAACAAAAAGGAGGTTTCTCGTAAGGAGGAGGACATTGTGACTGCAAGTGACAGTGCTTATTTAACTGTACATGAACCCAAGCTAAAGGTGGACTTGACTGCTTACGTGGAGAAGCATGAGTTCTGTTTTGATGCTGTTCTAAATGAGCATGTAACCAATGATGAGGTATATCGTGCTACGGTGGAGCCAATTATCCCTACAATTTTTCAGCAAACAAAGGCAACTTGTTTTGCTTATGGTCAGACAGGGAGTGGTAAAACGTATACTATGCAACCTTTACCTCTCAGAGCTGCAGGAGACCTTGTTAGATTATTGTATCAGCCAACTTATCGTAACCAGAGACTCAAGTTGTGGCTTAGCTACTTTGAGATCTACGGTGGAAAACTCTACGATCTTCTCAGTGATAGGAAGAAACTTTTTATGAGAGAAGATGGACGCCAACAAGTTTGCATTGTTGGACTGCAAGAATTTGAAGTTTTAGATGTACAGATTGTTAAAGAATACATTGAGAGGGGGAATGCGGCAAGAAGTACGGGGTCTACGGGTGCCAATGAGGAGTCCTCAAGGTCACATGCTATATTACAACTGGTTGTTAAAAAGCCCAAGGAGATAAAAGACTCCAGGCGGAACAGTGATGGAAAAGAGTCCAAGGGTGGGAAGGTTGTGGGTAAAATCTCTTTTATCGATCTAGCTGGTAGTGAAAGAGGTGCCGACACAACTGATAATGACCGACAAACACGGATTGAGGGAGCTGAAATTAACAAGAGTCTTTTAGCTCTCAAGGAGTGTATACGTGCTCTTGACAATGACCAGTTTCATATTCCATTTCGTGGGAGCAAACTGACTGAGGTGCTCCGAGATTCCTTTGTTGGAAACTCAAGAACCGTTATGATCTCTTGCATTTCTCCAAATGCTGGTTCATGTGAACATACACTCAATACTCTCAGATATGCTGACAGGGTTAAGAGTTTGTCAAAAAGTGGAAATCCGAAAAAGGATCTGCTGTCAAGTTCATTGCCACCAATAAATAAAGAAGCCTCATCATCAGCTTCTTTGCCTTTTTCTGCCGATGGCAACAATGTTTATGAACAATATCAAGAAGCTAAAGTAGTAGATTCAGGTAGAAGGGTTACAGAGAAAGAAAGTTTCTCTTACAATTCTACGTCCGAAGTTGAAAAGCAGCATGGTAGTTTTCCTTCAAATTATTCCTCCAACAGCCATGCGAAAAGTGTTGGTTCTAGTGTTATGGAAAAGGAGACGGTTGAAGTGAAAACTAACCTCAGTAGTTCACCAAGTCAAAAGGTTTACTCATCATTTCCCCAAAACTCAGTTGACATGGAAAGAAAGGTGCAAAAGGTTTCTCCGCCCCGAATAAAAGCTTACAAGGATGAAAACTCTAAAAAGGTGGGAAATATGTCAAGTACTAGTCACAAGCGGCAAAGTTCAAGCAATGCTAACACAAACAGTATTGGGTCCAGACAATATGAACCAGAACCCACTCCTGGTGACGGTATCAATGAATTACATGAGGAAGAAGCATTGATTGCAGCTCATCGAAGACAAATTGAAGATACAATGGAAATTGTTCGTGAAGAAATGAAACTATTGGCAGATGTGGACCAACCGGGCAGCATGATAGACAACTATGTGAGCCAGTTGAGCTTTGTGCTGTCTCGCAAAGCAGCCAGCCTGGTTAGCCTACAAGCTCGCCTTGCTTGCTTTCAGCATAGACTTAAAGAGCAAGATATACTTGGTAGGGAGAGGGTACCCCGATAA

Network for GWHGAAZE012207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.24	Kinesin	223	550	8.90E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10393	KIF2_24, MCAK	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007018	biological_process	microtubule-based movement
GO:0003777	molecular_function	microtubule motor activity
GO:0005524	molecular_function	ATP binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.384
	SRR3591706	second leaf	2.349
	SRR3591707	mature leaf	1.849
	SRR3591708	Shoot apex	4.131
	SRR3591709	Stem	3.670
	SRR3591710	White floral bud	8.194
	SRR3591711	White flower	12.591
	SRR3591712	Green floral bud	4.585
	SRR3591713	Yellow flower	22.776
SRP173429	SRR8316895	Juvenile bud stage	4.703
	SRR8316896	Juvenile bud stage	6.586
	SRR8316897	Juvenile bud stage	4.197
	SRR8316894	Third green stage	2.611
	SRR8316900	Third green stage	5.623
	SRR8316901	Third green stage	4.232
	SRR8316898	Complete white stage	4.822
	SRR8316899	Complete white stage	7.103
	SRR8316903	Complete white stage	7.801
	SRR8316902	Silver flowering stage	5.626
	SRR8316904	Silver flowering stage	9.305
	SRR8316905	Silver flowering stage	3.989
	SRR8316906	Gold flowering stage	12.075
	SRR8316907	Gold flowering stage	13.759
	SRR8316908	Gold flowering stage	21.245
SRP132670	SRR6706286	Control	2.566
	SRR6706287	Light intensity 50%	3.303
	SRR6706288	Light intensity 20%	3.332
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.217
	CNS0095593	Slightly white alabastrum(diploid) 2	4.106
	CNS0095594	Slightly white alabastrum(diploid) 3	4.096
	CNS0095595	Whole white alabastrum(diploid) 2	3.451
	CNS0095596	Whole white alabastrum(diploid) 3	2.967
	CNS0095597	Whole white alabastrum(diploid) 4	3.161
	CNS0095598	Silvery flower (diploied) 1	5.013
	CNS0095599	Silvery flower (diploied) 2	3.399
	CNS0095600	Silvery flower (diploied) 3	6.952
	CNS0095601	Golden flower (diploid) 1	3.783
	CNS0095602	Golden flower (diploid) 2	6.251
	CNS0095603	Golden flower (diploid) 3	7.236
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.413
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.765
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.528
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.090
	CNS0095610	Silvery flower (tetraploid) 1	10.049
	CNS0095611	Silvery flower (tetraploid) 2	7.478
	CNS0095612	Silvery flower (tetraploid) 3	16.403
	CNS0095613	Golden flower (tetraploid) 1	10.943
	CNS0095614	Golden flower (tetraploid) 2	12.406
	CNS0095615	Golden flower (tetraploid) 3	15.984
CRA001975	CRR073297	Stem 1	4.900
	CRR073298	Stem 2	4.383
	CRR073299	Stem 3	3.314
	CRR073300	Leaf 1	3.598
	CRR073301	Leaf 2	2.779
	CRR073302	Leaf 3	2.219
	CRR073303	Juvenile bud 1	1.790
	CRR073304	Juvenile bud 2	1.322
	CRR073305	Juvenile bud 3	2.296
	CRR073306	Third green 1	2.459
	CRR073307	Third green 2	2.593
	CRR073308	Third green 3	3.069
	CRR073309	Second white 1	3.277
	CRR073310	Second white 2	6.325
	CRR073311	Second white 3	4.938
	CRR073312	Silver flowering 1	6.325
	CRR073313	Silver flowering 2	7.258
	CRR073314	Silver flowering 3	8.447
	CRR073315	Gold flowering 1	1.213
	CRR073316	Gold flowering 2	1.274
	CRR073317	Gold flowering 3	1.028
	CRR073318	Tawny withering 1	2.074
	CRR073319	Tawny withering 2	3.097
	CRR073320	Tawny withering 3	3.664