Gene detail

Detail information of GWHGAAZE012234

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009352281.1	0	PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X3 [Pyrus x bretschneideri]
Swissprot	tr\|C6L7U1\|LIN1_LOTJA	4E-81	Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250\|UniProtKB:D1FP53}
trEMBL	tr\|M1ASW5\|M1ASW5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400029484}
TAIR10	AT3G06880.2	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82163732	82171172	+
GWHAAZE00000003	mRNA	82163732	82171172	+
GWHAAZE00000003	exon	82163732	82164429	+
GWHAAZE00000003	exon	82165486	82165558	+
GWHAAZE00000003	exon	82165680	82165943	+
GWHAAZE00000003	exon	82166467	82167290	+
GWHAAZE00000003	exon	82167649	82167790	+
GWHAAZE00000003	exon	82167917	82168162	+
GWHAAZE00000003	exon	82168249	82168543	+
GWHAAZE00000003	exon	82168767	82168888	+
GWHAAZE00000003	exon	82169045	82169164	+
GWHAAZE00000003	exon	82169309	82169440	+
GWHAAZE00000003	exon	82169522	82169644	+
GWHAAZE00000003	exon	82169729	82169839	+
GWHAAZE00000003	exon	82169918	82170064	+
GWHAAZE00000003	exon	82170155	82170280	+
GWHAAZE00000003	exon	82170940	82171056	+
GWHAAZE00000003	exon	82171155	82171172	+
GWHAAZE00000003	CDS	82163732	82164429	+
GWHAAZE00000003	CDS	82165486	82165558	+
GWHAAZE00000003	CDS	82165680	82165943	+
GWHAAZE00000003	CDS	82166467	82167290	+
GWHAAZE00000003	CDS	82167649	82167790	+
GWHAAZE00000003	CDS	82167917	82168162	+
GWHAAZE00000003	CDS	82168249	82168543	+
GWHAAZE00000003	CDS	82168767	82168888	+
GWHAAZE00000003	CDS	82169045	82169164	+
GWHAAZE00000003	CDS	82169309	82169440	+
GWHAAZE00000003	CDS	82169522	82169644	+
GWHAAZE00000003	CDS	82169729	82169839	+
GWHAAZE00000003	CDS	82169918	82170064	+
GWHAAZE00000003	CDS	82170155	82170280	+
GWHAAZE00000003	CDS	82170940	82171056	+
GWHAAZE00000003	CDS	82171155	82171172	+

Transcript Sequence
>GWHTAAZE012248 ATGGCTTCAACTTCTCATTCTTCTTCATTTTCCTCTCAAGAATCCTCCATTCGGGTACTCGTTAATTCCATCAACCAACACTTAACTGAATTACTATTGGACTCCAAAACCCGAAAACACTTGAATTCGGAATGCAAGTCCAAGCTCAAGATAGAAAAGCAGGACTTTTTCGAGTTCTCGGAGCAATCCATAATATCAAACCTCTACTGGGGTATTGAGGCTGCTGAGGCTGCAGTGGAATCCAAATCTGAAGAAGACCGTATTTCGAGGCTGAAGAGCTCAGAGAGAATGCTACAAGTACCGGCTCTGCTCAATGAGCATGGAGTTACAGCTGGGATTGATAACGCGTATTTGATTTGTTGCTCTTATTTTTATCTGTCTATAATTTGGAGATTACAAGGGGACGAGCGGCAGGCTTCGATTCATTTTCTCCAGTCTCTGGTAGTTTCTCCGCCGATTGTTAGTTCGAATTTTGCACCCGAGCTTTGTAGATACATTTTCTTTTTGAGTGTGGGATCCAAGAGGGTGTGTTTGGTTAACTTTGAAGAGGATGAGGTTAGTGAAGAAATGAGAAGCATGGCGAGGAGATATAAGGCGCGGTTAACATATTATCGGGTTATGGCTTATGGAGAAACAAGTCAATATCATCATTGTGGCACAGATATTGATTTATCCGAGGATAATTCGCAATGTTCTATGAATGTGAATTCCAGGAGAATTGAACCATGGGATCCAAATGAACGAGCACAAAGCTCGAGAACTTATCATAATTTCGAAAAGGTACATCCACACGATCATGCAGACAATGTGAGTGATGGCATTGTGGAAGAGGCTATGGAACTCTCTGGGATTCAAGAACTTAAAGAGACGAGAAAAGCTCTTACAAGTTTGGATAAATTTTCTGGGAAAGTTGTAGAGAAAGGCTCAAATATAAAGTGCCTCAAAGTCCAAGATATACTTGAGGAATATCAGTCGGATACAACAATTTCCTCAGATTCACAAAACGGTGATTTTGAAGAAGAAAGTAGTTCCGAGAACTATCAATTCCAAAAGAACCCACATGAAATTTCTCTGTGTTTTCAAGAAAATGGAATACTTGAGAAGTTAATTTCAAAGCTATGCTTCTCGGAAGAATTGGGATGGTCCGAGGAAGATTACACAGTTGAAATCACAACAATATACGAGATGTTGATGAATAGAAAAGGACTCAAGTATTCCTTATTGAAGGATGTAATTTTAGATCAACTTCTAATGGCGATTTCAACTTCCAAAGAAGAGGGTATCGTAAGAGCATCAGTGTCGATACTTTCGACTATTATTTCAACGAACAAATCAGTTATAGAAGAAATCAAGCAAAAGGGTCTACAGTTGTCCGATTTGGCAAGCGCTTTAAAGAGAAATGTGCATGAAGCAGCTATTCTAATTTACTTAATAAATCCAACCCCGTCCGAAATTAGAACTTTAGAACTTTTACCAATACTTGTTGAGGTTATTTGTAATTCAAATGGTTATAAGAGCGGTCGCATGCCAGTTTTACTGACACCACCAACAGCATCTCTGATGATTATGGAAGTACTAGTAACTGCATTTGATTATGCAACAAATAATGCTCACTTGGCGGTAATCAGTTCACCAAGAGTCCTTTGTGGGATCTTAAATGTTCCGAGCAATAATAGTATGGAAGAGGTTATCTCTTTGGCTTCTGTTCTTGTGAGGTGTATGCGCTTTGATGGGGAATGCAGAACATATTTATCACAGTGTACCCCGGTCGGTCCATTCATCTCTCTCCTGATAAGTAACCAAAAGCGCGCTAAATTCATTGCCCTCGAATTTTTCCACGAAATACTTCGCATCCCAAGGTCGTCAGCCATTACGGTGTTGGAGCAGATAAAGAAAACAGGAAAAATCAACAATATATGTGTATTAGTGCTCCTCATACAGCAATCACAACCAGAGTACAAGCTTTTAGCAGCAAGTTTATTGCTCCAATTAGACATGCTTGCAAACTCATCGAGTAATACTATATATCGTGAAGAAGCAGTAGAGGCCCTCCTTGAGGCATTGACATGTGAAGATAACGCTGCTGCACAGCAATTATCAGCATTCATTCTTTCAAACCTTGGTGGAACACATGCTTGGACAGGAGAATCATATACAATACCATGGTTGCTAAAAAAGGGTGGTTTGACCTCACTCCACTACAAGAATATGATAAAAAACGTCGACTGGTCGGACCAAAGCCTACAGGATGCTGGTATAGACACTTGGTCCAGCAAGATTGCGAGGCGTATCATAAAGTTGGGGAACCCTATTTTTCATGCTTTGGAGAAGGGGCTGAAGAGTAAAATAAAGGGGGTATCTCGACATTGCCTCACAGCTATTGCATGGCTCGGGTGCGAAATTGTGAAAGGTCCCAATGATATGAGACATTCTGCGTGCGAGATTTTGCTTAGTACAATTGAGCAATATTTGCACCCAGGATTGGAGCTTGAAGAAAGACTCTTAGCATGTCTATGTATCTATAATTATGCTTCTGGTAGAGGGATGCAGAAACTAATTCATTTTTCAGAAGGAGTAAGAGAGTCACTGAGACGGCTTTCTAATATAACCTGGATGGCAGAGGAATTACTGAAAGTAGCTGATTATTTCCAGCCGAATAAATGGAGAATTTCTTGTGTTCATACACAAATTCTGGAAGTGGGGTTCAAGAACAGTGGGGCTGTAGGTGCACTTATCTACTACGGAGGACAGCTTTACAGTGGATACGCAGACGGTTCAATTAAGGTGTGGGACGTCAAGGAAACAACAGCCACACTTGTATGGGAGATAAAGGAGCACAGAAAGGCAGTGACATGTTTTTCGCTTTTCGAACCGGGGAACTGCCTGTTGAGCGGATCTACTGACAAAACAATTCGGATTTGGCAAATGGTCCAAAGGAAACTGGAGTGCATTGAAGTAATTGCAACAAAGGATGCAATTCTTACTATAGATACTTCTGGTGAACTGATCTTTGCATATACACAAAGCCATAAAATAAAGGTTTTTGATGCATCAAGAAAAGCCAAAGATTTTTGCAAGAACAAAAAGGTGAAGTGCATAAGGGTGACTCAAGGAAAGGTTTACGTAGGCTGTGCGGACTCAAGTATACAGGAGTTAGCTATAACGAGCAATCGTCAGCTAGAGATCAAGGCTGCAACAAAGAGTTGGATGATGCAAAACAAGTCCATAAATTCCATTGCTCTCTACAAAGATTGGCTATATAGTGCAAGTGCAGTTGTTGAAGGTTCACATATAAGGGAATGGAGAAGGAATGGCAAACCCCAAATATCGATAGTACCAGAGAAAAAAGGCAATGTGGTAGCAATGAGAGTGGTGGAGGACTTCATTTACTTGCTTTGCAGTTCATCCACAAACAATATCCAGATCTGGTTGAGAGGGACACAGCATAAAGTTGGAAGGCTAGCAGCAGGGAACAAGATAACAAGCCTACTCACAGCCAACGACATGATTCTTTGTGGTACTGATACGGGAGTAATCAAGGGTTGGATCCCCCTCTAA

Network for GWHGAAZE012234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	940	974	6.30E-05

Protein Sequence

>GWHPAAZE012241
MASTSHSSSFSSQESSIRVLVNSINQHLTELLLDSKTRKHLNSECKSKLKIEKQDFFEFSEQSIISNLYWGIEAAEAAVESKSEEDRISRLKSSERMLQVPALLNEHGVTAGIDNAYLICCSYFYLSIIWRLQGDERQASIHFLQSLVVSPPIVSSNFAPELCRYIFFLSVGSKRVCLVNFEEDEVSEEMRSMARRYKARLTYYRVMAYGETSQYHHCGTDIDLSEDNSQCSMNVNSRRIEPWDPNERAQSSRTYHNFEKVHPHDHADNVSDGIVEEAMELSGIQELKETRKALTSLDKFSGKVVEKGSNIKCLKVQDILEEYQSDTTISSDSQNGDFEEESSSENYQFQKNPHEISLCFQENGILEKLISKLCFSEELGWSEEDYTVEITTIYEMLMNRKGLKYSLLKDVILDQLLMAISTSKEEGIVRASVSILSTIISTNKSVIEEIKQKGLQLSDLASALKRNVHEAAILIYLINPTPSEIRTLELLPILVEVICNSNGYKSGRMPVLLTPPTASLMIMEVLVTAFDYATNNAHLAVISSPRVLCGILNVPSNNSMEEVISLASVLVRCMRFDGECRTYLSQCTPVGPFISLLISNQKRAKFIALEFFHEILRIPRSSAITVLEQIKKTGKINNICVLVLLIQQSQPEYKLLAASLLLQLDMLANSSSNTIYREEAVEALLEALTCEDNAAAQQLSAFILSNLGGTHAWTGESYTIPWLLKKGGLTSLHYKNMIKNVDWSDQSLQDAGIDTWSSKIARRIIKLGNPIFHALEKGLKSKIKGVSRHCLTAIAWLGCEIVKGPNDMRHSACEILLSTIEQYLHPGLELEERLLACLCIYNYASGRGMQKLIHFSEGVRESLRRLSNITWMAEELLKVADYFQPNKWRISCVHTQILEVGFKNSGAVGALIYYGGQLYSGYADGSIKVWDVKETTATLVWEIKEHRKAVTCFSLFEPGNCLLSGSTDKTIRIWQMVQRKLECIEVIATKDAILTIDTSGELIFAYTQSHKIKVFDASRKAKDFCKNKKVKCIRVTQGKVYVGCADSSIQELAITSNRQLEIKAATKSWMMQNKSINSIALYKDWLYSASAVVEGSHIREWRRNGKPQISIVPEKKGNVVAMRVVEDFIYLLCSSSTNNIQIWLRGTQHKVGRLAAGNKITSLLTANDMILCGTDTGVIKGWIPL

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.783
	SRR3591706	second leaf	16.905
	SRR3591707	mature leaf	0.653
	SRR3591708	Shoot apex	18.997
	SRR3591709	Stem	3.925
	SRR3591710	White floral bud	5.716
	SRR3591711	White flower	2.933
	SRR3591712	Green floral bud	10.859
	SRR3591713	Yellow flower	0.025
SRP173429	SRR8316895	Juvenile bud stage	16.025
	SRR8316896	Juvenile bud stage	16.347
	SRR8316897	Juvenile bud stage	6.701
	SRR8316894	Third green stage	13.425
	SRR8316900	Third green stage	33.085
	SRR8316901	Third green stage	22.389
	SRR8316898	Complete white stage	0.824
	SRR8316899	Complete white stage	24.661
	SRR8316903	Complete white stage	3.263
	SRR8316902	Silver flowering stage	0.069
	SRR8316904	Silver flowering stage	0.072
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.054
	SRR8316907	Gold flowering stage	0.218
	SRR8316908	Gold flowering stage	0.305
SRP132670	SRR6706286	Control	26.196
	SRR6706287	Light intensity 50%	30.222
	SRR6706288	Light intensity 20%	34.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.565
	CNS0095593	Slightly white alabastrum(diploid) 2	11.852
	CNS0095594	Slightly white alabastrum(diploid) 3	8.320
	CNS0095595	Whole white alabastrum(diploid) 2	12.428
	CNS0095596	Whole white alabastrum(diploid) 3	12.644
	CNS0095597	Whole white alabastrum(diploid) 4	10.163
	CNS0095598	Silvery flower (diploied) 1	8.347
	CNS0095599	Silvery flower (diploied) 2	6.302
	CNS0095600	Silvery flower (diploied) 3	3.423
	CNS0095601	Golden flower (diploid) 1	8.683
	CNS0095602	Golden flower (diploid) 2	5.625
	CNS0095603	Golden flower (diploid) 3	6.543
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.019
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.340
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.590
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.311
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.760
	CNS0095610	Silvery flower (tetraploid) 1	0.167
	CNS0095611	Silvery flower (tetraploid) 2	3.378
	CNS0095612	Silvery flower (tetraploid) 3	0.518
	CNS0095613	Golden flower (tetraploid) 1	0.024
	CNS0095614	Golden flower (tetraploid) 2	0.047
	CNS0095615	Golden flower (tetraploid) 3	0.025
CRA001975	CRR073297	Stem 1	31.049
	CRR073298	Stem 2	30.296
	CRR073299	Stem 3	19.061
	CRR073300	Leaf 1	35.104
	CRR073301	Leaf 2	30.232
	CRR073302	Leaf 3	15.938
	CRR073303	Juvenile bud 1	14.132
	CRR073304	Juvenile bud 2	8.492
	CRR073305	Juvenile bud 3	12.847
	CRR073306	Third green 1	0.164
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.230
	CRR073309	Second white 1	0.033
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.101
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.098
	CRR073314	Silver flowering 3	0.025
	CRR073315	Gold flowering 1	0.118
	CRR073316	Gold flowering 2	0.468
	CRR073317	Gold flowering 3	0.042
	CRR073318	Tawny withering 1	8.646
	CRR073319	Tawny withering 2	6.486
	CRR073320	Tawny withering 3	7.856