Gene detail

Detail information of GWHGAAZE012235

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006419549.1	hypothetical protein CICLE_v10004959mg [Citrus clementina]
Swissprot	tr\|Q8S8T4\|UXS4_ARATH	UDP-glucuronic acid decarboxylase 4
trEMBL	tr\|V4U0L8\|V4U0L8_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR32789.1}
TAIR10	AT2G47650.1	UDP-xylose synthase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82187889	82193196	+
GWHAAZE00000003	mRNA	82187889	82193196	+
GWHAAZE00000003	exon	82187889	82188063	+
GWHAAZE00000003	exon	82189499	82189785	+
GWHAAZE00000003	exon	82189985	82190162	+
GWHAAZE00000003	exon	82191218	82191297	+
GWHAAZE00000003	exon	82191502	82191585	+
GWHAAZE00000003	exon	82192014	82192088	+
GWHAAZE00000003	exon	82192514	82192606	+
GWHAAZE00000003	exon	82192975	82193196	+
GWHAAZE00000003	CDS	82187889	82188063	+
GWHAAZE00000003	CDS	82189499	82189785	+
GWHAAZE00000003	CDS	82189985	82190162	+
GWHAAZE00000003	CDS	82191218	82191297	+
GWHAAZE00000003	CDS	82191502	82191585	+
GWHAAZE00000003	CDS	82192014	82192088	+
GWHAAZE00000003	CDS	82192514	82192606	+
GWHAAZE00000003	CDS	82192975	82193196	+

Transcript Sequence
>GWHTAAZE012249 ATGATTAGCCGGCAACAGCTGGTGTTCTTATTGATCGGAGTTGCGATATCATCTCTTTTCTTCGCGGTGTTCCGATATGAACAGATGTCACCAGAGTCATTTCACTCGTCGGAGTTGAGTCACATACCTCGCCGGGTCACCTATGAGCTCTACGATGGGGATCGCGTGAATGCAGGTGGGAGAGTTCCTCTGGGATTGAAGAGAAAGACACTGAGGATAGTGGTAACGGGCGGAGCTGGGTTCGTGGGAAGCCACCTGGTGGACCGTCTGATGGCACGTGGGGATAGTGTGATCGTAGTGGATAATTTCTTTACGGGTCGAAAAGAGAATCTAATGCACCATTTCAGAAACCCGAGATTCGAGATGATTCGTCACGATGTCGTGGAACCTATTCTATTAGAAGTTGATCAGATCTATCACCTGGCTTGTCCTGCCTCGCCAGTCCATTACAAATACAACCCTTTGGCCTTGATTCCTAGGATTAGAGATCACAAGACAAATGTGATGGGGACACTCAATATGCTAGGGCTGGCAAAAAGAGTTGGTGCGCGGTTCTTGCTAACAAGCACTAGCGAGGTGTATGGTGATCCATTGCAACACCCCCAGGCTGAGAATTACTGGGGCAATGTCAACCCAATTGGTGTTAGGAGTTGTTACGATGAAGGAAAGCGTGTGGCTGAGACTCTGTCCATGGATTATCATAGAGGACTTAATGTCGAGGTGAGAATTGCTCGGATATTTAACACTTATGGACCACGCATGTGCCTTGACGATGGTCGTGTCGTTAGCAATTTTGTTGCTCAGGCCTTAAGGAAGGAGCCATTGACTGTTTATGGGGATGGGAAGCAAACTAGGAGTTTCCAATATGTTTCTGATTTGGTTGAAGGTTTGATGAGATTAATGGAAGGGAGACATGTGGGTCCTTTCAATCTTGGCAACCCTGGTGAATTCACCATGCTTGAACTTGCTGAGGTGGTACAAGAGACAATTGATCCCAATGCGAAGATAGAGTTCAGACCAAACACGGAAGACGATCCCCACAAGAGAAAGCCAGACATTTCAAGGGCTAAAGAGCTTCTCGGATGGGAGCCTAAGGTGTCCCTTCGCGAAGGGCTCCCTCTCATGGTTTCTGACTTCCGGAAACGCATTTTTGGCAACGAGAAGGAAGATGGTTCTTCCATTTCCTCAGAATAA

Network for GWHGAAZE012235

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	75	373	1.40E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08678	UXS1, uxs	Metabolic pathways	map01100
K08678	UXS1, uxs	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.113
	SRR3591708	Shoot apex	0.184
	SRR3591709	Stem	0.572
	SRR3591710	White floral bud	36.594
	SRR3591711	White flower	1.353
	SRR3591712	Green floral bud	78.934
	SRR3591713	Yellow flower	0.116
SRP173429	SRR8316895	Juvenile bud stage	4.746
	SRR8316896	Juvenile bud stage	24.068
	SRR8316897	Juvenile bud stage	12.345
	SRR8316894	Third green stage	11.737
	SRR8316900	Third green stage	64.609
	SRR8316901	Third green stage	57.915
	SRR8316898	Complete white stage	0.072
	SRR8316899	Complete white stage	0.838
	SRR8316903	Complete white stage	0.148
	SRR8316902	Silver flowering stage	0.052
	SRR8316904	Silver flowering stage	0.178
	SRR8316905	Silver flowering stage	0.100
	SRR8316906	Gold flowering stage	0.060
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.103
SRP132670	SRR6706286	Control	32.018
	SRR6706287	Light intensity 50%	33.412
	SRR6706288	Light intensity 20%	31.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.352
	CNS0095593	Slightly white alabastrum(diploid) 2	36.690
	CNS0095594	Slightly white alabastrum(diploid) 3	42.390
	CNS0095595	Whole white alabastrum(diploid) 2	97.851
	CNS0095596	Whole white alabastrum(diploid) 3	135.680
	CNS0095597	Whole white alabastrum(diploid) 4	121.215
	CNS0095598	Silvery flower (diploied) 1	0.887
	CNS0095599	Silvery flower (diploied) 2	0.992
	CNS0095600	Silvery flower (diploied) 3	0.066
	CNS0095601	Golden flower (diploid) 1	0.426
	CNS0095602	Golden flower (diploid) 2	0.063
	CNS0095603	Golden flower (diploid) 3	0.281
	CNS0095604	Slightly white alabastrum(tetraploid) 1	89.520
	CNS0095605	Slightly white alabastrum(tetraploid) 2	89.978
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.648
	CNS0095607	Whole white alabastrum(tetraploid) 1	195.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	252.171
	CNS0095609	Whole white alabastrum(tetraploid) 3	105.576
	CNS0095610	Silvery flower (tetraploid) 1	0.153
	CNS0095611	Silvery flower (tetraploid) 2	0.813
	CNS0095612	Silvery flower (tetraploid) 3	2.973
	CNS0095613	Golden flower (tetraploid) 1	0.153
	CNS0095614	Golden flower (tetraploid) 2	0.187
	CNS0095615	Golden flower (tetraploid) 3	1.063
CRA001975	CRR073297	Stem 1	10.394
	CRR073298	Stem 2	11.627
	CRR073299	Stem 3	5.597
	CRR073300	Leaf 1	55.020
	CRR073301	Leaf 2	41.599
	CRR073302	Leaf 3	23.754
	CRR073303	Juvenile bud 1	51.633
	CRR073304	Juvenile bud 2	50.813
	CRR073305	Juvenile bud 3	0.425
	CRR073306	Third green 1	5.354
	CRR073307	Third green 2	6.249
	CRR073308	Third green 3	4.077
	CRR073309	Second white 1	0.451
	CRR073310	Second white 2	0.681
	CRR073311	Second white 3	0.902
	CRR073312	Silver flowering 1	2.767
	CRR073313	Silver flowering 2	3.462
	CRR073314	Silver flowering 3	2.325
	CRR073315	Gold flowering 1	4.164
	CRR073316	Gold flowering 2	0.961
	CRR073317	Gold flowering 3	2.382
	CRR073318	Tawny withering 1	9.714
	CRR073319	Tawny withering 2	5.421
	CRR073320	Tawny withering 3	14.234