Gene detail

Detail information of GWHGAAZE012237

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010649581.1	PREDICTED: Fanconi anemia group I protein [Vitis vinifera]
trEMBL	tr\|A5BC88\|A5BC88_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81002.1}
TAIR10	AT5G49110.1	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82234545	82245161	+
GWHAAZE00000003	mRNA	82234545	82245161	+
GWHAAZE00000003	exon	82234545	82234993	+
GWHAAZE00000003	exon	82235629	82235710	+
GWHAAZE00000003	exon	82236420	82236611	+
GWHAAZE00000003	exon	82237715	82237779	+
GWHAAZE00000003	exon	82238110	82238269	+
GWHAAZE00000003	exon	82240041	82240286	+
GWHAAZE00000003	exon	82240370	82240486	+
GWHAAZE00000003	exon	82241206	82241394	+
GWHAAZE00000003	exon	82241474	82241555	+
GWHAAZE00000003	exon	82241958	82242889	+
GWHAAZE00000003	exon	82243302	82243818	+
GWHAAZE00000003	exon	82243900	82244090	+
GWHAAZE00000003	exon	82244715	82245161	+
GWHAAZE00000003	CDS	82234545	82234993	+
GWHAAZE00000003	CDS	82235629	82235710	+
GWHAAZE00000003	CDS	82236420	82236611	+
GWHAAZE00000003	CDS	82237715	82237779	+
GWHAAZE00000003	CDS	82238110	82238269	+
GWHAAZE00000003	CDS	82240041	82240286	+
GWHAAZE00000003	CDS	82240370	82240486	+
GWHAAZE00000003	CDS	82241206	82241394	+
GWHAAZE00000003	CDS	82241474	82241555	+
GWHAAZE00000003	CDS	82241958	82242889	+
GWHAAZE00000003	CDS	82243302	82243818	+
GWHAAZE00000003	CDS	82243900	82244090	+
GWHAAZE00000003	CDS	82244715	82245161	+

Transcript Sequence
>GWHTAAZE012251 ATGGTGTCAATTATGCGAGAGTTTTCGTTCTTGGATAAGGGGAGGTGTAGGGAGTTTGTAGATAAGGTGTTTGATAAAATGCAGTGTGCGGAGTTGCAGGATTTGCCGTCGCTGGTGTATCAGTTGTTGGTTTTGGGGTCTAAGGGTTTTTGTAAGAGGGAAATGGTTGAAGGGATTGTTATGTTTTTTGGAAAAATGGGGAAGAAGGGTGGGTCTATAGTTAGGCAGGTTGAAGGGACTGTGTTGTTGCATTTGAATTTTGCCGTGAAGCAGGATCCTTCTTTGGGGCAGGAAGTTATGGGGCTTGTTAGGGCGGATGTTCGAGCGCTTAATCATTTTACGACTGCGGTTTTGTTGTCGATTGCCAGAGTGAGGCGGTTCAATGAGAGCTCAATGGGAATTATGAAATCGGCTTTGAGCACTGCTTATAAGGACTACAAGTTTGCCAAAGTTTGTAAATGGCTACCAGATGATTTCAAGGAAGAATACCTGCAGAGAGCCATTTTAATAGAGGAAGCTGTTCTAAGAGCTGTTAACGAGAGCAATTGTGGAAGAGAACATATTTTGCCTAGTATTGTGCAGCTTGGCTTTGTGTTGGTAGAATCCATGGAAGACAAAGGCCATAATGAACACTGCAAGTCTGAGTCTCTGATGGGTTCTCAGGAGCTAGGTATTCAGATATTGAAAAGTTTATTCAACGTTCATGATATGGCGAGAAACGAGATCATTGAACAATGCAAATTCCGCATACTTTCTTCAAAGCCAGAACAAAGTTTGGCGATCATAAGACTCCTAAGTTATCTAGTTCGAAGTTATCCATACCCAATGCTGGAAAATGTTTCACATCTGAAGGAATTGTTGGATTATTTTACTTTCATGCAAGGAAAGATTGGCACCCATCTTGTTACTGCTCTGTTACCTCTGATCAAATTCAGTCGTGACCTTCAGGATTACACCATTTTAGTCGTGCGCAAGGCTATGTTTAAACGAGAAGCGTCTGTTCTCTTAGCCGCAACTAGTGCCATTATCGATCTGATTTTGACGGAGAAACAATTTAAAAAGGATGGTCCATATTCTTTTCAAGAATCGTCAAGCCAAGCCAGTTGCAGCCAGCAAGCTGAGGTGCCGTCTGGCATGAGAAGTGGTCTTTTCCAAGAGCTGAACGGTTTGCTGCAGAGATGCCTTTATCAAAAGGCAAAAGTCAAAGAGATCATGTACCATGGGCTTGTGAAGCTTGTTTTAGCAGACCCATTAGCTGCAGGGGCTGTTTTTGATTTCCTCTTGCCCCACTTTCTGCATTTTTACATAGAGGATGCAGATGTTCCACTTGGGATTAGCCGATGCATTAAATTGGAGAGTGGCAAAGTTTGTATTGAAGAGCCACTAGATTGCCTTTTGTCTTGTATCTCTTGGATTCTTCTACTTCAACCACCTGGGAAATCTGATCATCCTTCAGATTCATGGGCTTGTTTTGGTTTCTCCCTCACGCAAGAGAATGAGGCAAGAAGAACTTCGTCGGGCGAGTCATTCTCCAGTGCTTTATTAAAGATCCGGAAGTTTCTAAGAAATGGGAACATGCAAGGTTTACTGAGTCAGACTCAGGATTCAACCTCTACGCCTCTACAAGAAGGAAAGAAGGGATACCACGCTTGGATATTATCAGGAATTATAGAGGTAGTTTTGAATACCATTGCCACTGAATTGGAGAAAGCGACTGATGATAAAAAATCGGATTTGGAGAAAGAGCTTATTGAGCTTGTTAATACTTACGAGTCTTTGGAAAAGTATACTTTGATTTCTAAGCAATCCAACAGTATTAAACGTGGGATTGTACGATCTACGGCTCAGGATATACCAGCTAATATTGACCTGGGTAACTTGAAATTCTTCAAAGAACGAACCCCATTATTGGCAACCTCAAGTATCTGCCAGCTACTGCTAACAGCGTTAGAAATATATAAATGCGATTGCTCTAATATTACTTCAACTTCACAGAATCGTAGCCAGTTATCAAGTCGATGTTCTAAATTTATTTCTTTCATCTTGAGCTCTTCCATTCGTCAAGTAAAATCTTTCCCGTTTGTTGGAAAAGATGATCCGTTAATGAAATTGATTTACGGAGACATCAAGGCGTTGGGTCCACCTTTGCTGAGATTGCTTTGGTTGCTCAAGGCGGAGCAAAATTTCGAGGTTAGTCAAAAGAAGGAAGCTAAGGCGAAGAAAGATGGTGAAGAGAGAAAGGAACTTATTCATTTGGCCTTGGTTTGCTTGAAGGAGTTGGTAATAGTAAGTTTGCAGAGCGAGGATCAAATGGGCTTGATTGAAGATATGGTGTCAGAATCTATACTTGAGTCTATGTCAACAAATGTTCCAGATGCTGATTTAGATGATGAATGTGAAGTAGGCTATAGAAGTGATGATCAAAATACAAGAAGCAAAGATATGTTCCTAAAAAAAGTCATAAAGCCCTTGTTCTCCGAGCTTCTTGCAGTTTCATTCTTCCAGGAAGTTGAGATCCTCTGTGATATAACAATGATGATTGGAAACAAGTTGCCCCGTGAAAGGAGGAATTTTCTTGGAACCTGGGCGATATGCACCTGTAAAAGCAGTGATATATCCAATTCCAAGATAGCGAAAAGTGTGGTTTCTCTTGCTCTTGAGCTAACTTCACCTCCAAATGATTTAGTTGTTGCTCAAGAAATGACCCTGGAGCTGTTTAAAGTAATTGGAATACTTGAAATACCGCCGACCCAACAACCACTAAAGAAATCCGAAATTTACCGTGTCATAAATGACTTGACAAAAGCTGCAGTAGCTTCCTCCATACTGCAGATGATTGAGTCAATCATTGTCGATATGGATTGGGTCATAGTGAAATTGAAGAATTGCTCAACGGCGACTCAGAAACTGTTGTTGCATGATGAGAATCGAGAACAAGAGGATCCATGTTTGGCATTGGAAGAGGCTCTCGACTCGAGGGCTGAAGCTGTGGTGAAAGTGTTGTCTTCTTTTTGGGTAATGAACCTTGAGGATCCTCAAGTAGAACATTTACTGAGAGTGGCTGCTAAGTTTTACAAGAATTTGGCCCGAATGTCGAAGCTTCGAATCGCTCCTAAAGGTTGCAAGCAAGTTTGGCCCACCCTCAAGTACCAGAAGCTTGTGGAAATAACTTGCAAGCAGCTAACAGCTCCTCTGTATGGCTTTCTTGCTGATATTCAAAAGAAACAACAAATGAGAGCAAAAATTAGAGGAATTGTCAACAAGATCAAGAGGGAGAACAGATGCATCCCAGACTTGATTTTCCAAATAGAAGACTATGAAAAGTATCTTATCCTACTTAGCAAGGCGACCAAAGTTAACTTGTTGAGGCACGCCAAACGTAGCACTTCCCGAGATTTTAGAATAATCAACCCGGAAAATGAGGAAGAAGATACTTCAGTCCATGAACCCAATGAGAATAACGACTCTGCAACTCAAAATGAACCATCCGAAGAACATGGAGAAAATGAGGATGAAGGTGTTGGATTGGACAATGCGTTATTGCCCGAGCCTGATGATCCAATGGCTGTGGAGGATTCCGAGTCTGATGGAGAAAATGGAGATTCGATTCTCAATGCAAAGAGGGCTAGGATGAATAGAGTTGTGGAGGAGTCTGAGGATGAGGCATAA

Network for GWHGAAZE012237

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14675.7	FANCI_S1	11	90	4.20E-10
PF14679.7	FANCI_HD1	94	174	1.40E-19
PF14676.7	FANCI_S2	188	342	8.10E-46
PF14680.7	FANCI_HD2	361	597	2.10E-53
PF14678.7	FANCI_S4	898	1137	1.20E-59

Protein Sequence

>GWHPAAZE012244
MVSIMREFSFLDKGRCREFVDKVFDKMQCAELQDLPSLVYQLLVLGSKGFCKREMVEGIVMFFGKMGKKGGSIVRQVEGTVLLHLNFAVKQDPSLGQEVMGLVRADVRALNHFTTAVLLSIARVRRFNESSMGIMKSALSTAYKDYKFAKVCKWLPDDFKEEYLQRAILIEEAVLRAVNESNCGREHILPSIVQLGFVLVESMEDKGHNEHCKSESLMGSQELGIQILKSLFNVHDMARNEIIEQCKFRILSSKPEQSLAIIRLLSYLVRSYPYPMLENVSHLKELLDYFTFMQGKIGTHLVTALLPLIKFSRDLQDYTILVVRKAMFKREASVLLAATSAIIDLILTEKQFKKDGPYSFQESSSQASCSQQAEVPSGMRSGLFQELNGLLQRCLYQKAKVKEIMYHGLVKLVLADPLAAGAVFDFLLPHFLHFYIEDADVPLGISRCIKLESGKVCIEEPLDCLLSCISWILLLQPPGKSDHPSDSWACFGFSLTQENEARRTSSGESFSSALLKIRKFLRNGNMQGLLSQTQDSTSTPLQEGKKGYHAWILSGIIEVVLNTIATELEKATDDKKSDLEKELIELVNTYESLEKYTLISKQSNSIKRGIVRSTAQDIPANIDLGNLKFFKERTPLLATSSICQLLLTALEIYKCDCSNITSTSQNRSQLSSRCSKFISFILSSSIRQVKSFPFVGKDDPLMKLIYGDIKALGPPLLRLLWLLKAEQNFEVSQKKEAKAKKDGEERKELIHLALVCLKELVIVSLQSEDQMGLIEDMVSESILESMSTNVPDADLDDECEVGYRSDDQNTRSKDMFLKKVIKPLFSELLAVSFFQEVEILCDITMMIGNKLPRERRNFLGTWAICTCKSSDISNSKIAKSVVSLALELTSPPNDLVVAQEMTLELFKVIGILEIPPTQQPLKKSEIYRVINDLTKAAVASSILQMIESIIVDMDWVIVKLKNCSTATQKLLLHDENREQEDPCLALEEALDSRAEAVVKVLSSFWVMNLEDPQVEHLLRVAAKFYKNLARMSKLRIAPKGCKQVWPTLKYQKLVEITCKQLTAPLYGFLADIQKKQQMRAKIRGIVNKIKRENRCIPDLIFQIEDYEKYLILLSKATKVNLLRHAKRSTSRDFRIINPENEEEDTSVHEPNENNDSATQNEPSEEHGENEDEGVGLDNALLPEPDDPMAVEDSESDGENGDSILNAKRARMNRVVEESEDEA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10895	FANCI	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.293
	SRR3591706	second leaf	0.405
	SRR3591707	mature leaf	0.304
	SRR3591708	Shoot apex	2.829
	SRR3591709	Stem	1.012
	SRR3591710	White floral bud	0.646
	SRR3591711	White flower	1.418
	SRR3591712	Green floral bud	0.663
	SRR3591713	Yellow flower	0.581
SRP173429	SRR8316895	Juvenile bud stage	0.847
	SRR8316896	Juvenile bud stage	1.404
	SRR8316897	Juvenile bud stage	0.413
	SRR8316894	Third green stage	0.497
	SRR8316900	Third green stage	1.028
	SRR8316901	Third green stage	0.789
	SRR8316898	Complete white stage	0.105
	SRR8316899	Complete white stage	0.913
	SRR8316903	Complete white stage	0.346
	SRR8316902	Silver flowering stage	0.188
	SRR8316904	Silver flowering stage	0.346
	SRR8316905	Silver flowering stage	0.126
	SRR8316906	Gold flowering stage	0.762
	SRR8316907	Gold flowering stage	0.752
	SRR8316908	Gold flowering stage	0.523
SRP132670	SRR6706286	Control	0.292
	SRR6706287	Light intensity 50%	0.375
	SRR6706288	Light intensity 20%	0.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.404
	CNS0095593	Slightly white alabastrum(diploid) 2	0.474
	CNS0095594	Slightly white alabastrum(diploid) 3	0.890
	CNS0095595	Whole white alabastrum(diploid) 2	0.338
	CNS0095596	Whole white alabastrum(diploid) 3	0.390
	CNS0095597	Whole white alabastrum(diploid) 4	0.384
	CNS0095598	Silvery flower (diploied) 1	0.951
	CNS0095599	Silvery flower (diploied) 2	0.853
	CNS0095600	Silvery flower (diploied) 3	1.017
	CNS0095601	Golden flower (diploid) 1	0.643
	CNS0095602	Golden flower (diploid) 2	0.664
	CNS0095603	Golden flower (diploid) 3	0.837
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.456
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.756
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.342
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.130
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.401
	CNS0095610	Silvery flower (tetraploid) 1	0.792
	CNS0095611	Silvery flower (tetraploid) 2	1.023
	CNS0095612	Silvery flower (tetraploid) 3	0.987
	CNS0095613	Golden flower (tetraploid) 1	0.166
	CNS0095614	Golden flower (tetraploid) 2	0.299
	CNS0095615	Golden flower (tetraploid) 3	0.066
CRA001975	CRR073297	Stem 1	0.823
	CRR073298	Stem 2	0.923
	CRR073299	Stem 3	0.498
	CRR073300	Leaf 1	0.623
	CRR073301	Leaf 2	0.611
	CRR073302	Leaf 3	0.372
	CRR073303	Juvenile bud 1	0.503
	CRR073304	Juvenile bud 2	0.104
	CRR073305	Juvenile bud 3	0.512
	CRR073306	Third green 1	0.126
	CRR073307	Third green 2	0.075
	CRR073308	Third green 3	0.159
	CRR073309	Second white 1	0.308
	CRR073310	Second white 2	0.294
	CRR073311	Second white 3	0.291
	CRR073312	Silver flowering 1	0.170
	CRR073313	Silver flowering 2	0.147
	CRR073314	Silver flowering 3	0.227
	CRR073315	Gold flowering 1	0.239
	CRR073316	Gold flowering 2	0.948
	CRR073317	Gold flowering 3	0.092
	CRR073318	Tawny withering 1	0.758
	CRR073319	Tawny withering 2	0.685
	CRR073320	Tawny withering 3	1.007