Detail information of GWHGAAZE012243


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009595337.11.16634E-63PREDICTED: RING-H2 finger protein ATL2-like [Nicotiana tomentosiformis]
Swissprottr|Q8L9T5|ATL2_ARATH2E-51RING-H2 finger protein ATL2
trEMBLtr|M1ASU9|M1ASU9_SOLTU5E-61Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400029456}
TAIR10AT3G16720.12E-34TOXICOS EN LEVADURA 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8237450082375183+
GWHAAZE00000003mRNA8237450082375183+
GWHAAZE00000003exon8237450082375183+
GWHAAZE00000003CDS8237450082375183+
Transcript Sequence

Network for GWHGAAZE012243

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2621051.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf85.560
SRR3591706second leaf15.642
SRR3591707mature leaf8.934
SRR3591708Shoot apex74.657
SRR3591709Stem153.866
SRR3591710White floral bud49.823
SRR3591711White flower80.031
SRR3591712Green floral bud18.804
SRR3591713Yellow flower57.250
SRP173429 SRR8316895Juvenile bud stage 71.427
SRR8316896Juvenile bud stage 45.183
SRR8316897Juvenile bud stage 54.655
SRR8316894Third green stage 23.525
SRR8316900Third green stage 33.245
SRR8316901Third green stage 47.585
SRR8316898Complete white stage 1.989
SRR8316899Complete white stage 76.306
SRR8316903Complete white stage 6.055
SRR8316902Silver flowering stage31.927
SRR8316904Silver flowering stage16.720
SRR8316905Silver flowering stage15.307
SRR8316906Gold flowering stage 73.396
SRR8316907Gold flowering stage 68.999
SRR8316908Gold flowering stage 77.134
SRP132670SRR6706286Control7.912
SRR6706287Light intensity 50%8.772
SRR6706288Light intensity 20%4.782
CNP0000432CNS0095592Slightly white alabastrum(diploid) 165.998
CNS0095593Slightly white alabastrum(diploid) 2115.084
CNS0095594Slightly white alabastrum(diploid) 397.007
CNS0095595Whole white alabastrum(diploid) 235.909
CNS0095596Whole white alabastrum(diploid) 38.136
CNS0095597Whole white alabastrum(diploid) 449.043
CNS0095598Silvery flower (diploied) 1211.449
CNS0095599Silvery flower (diploied) 2157.972
CNS0095600Silvery flower (diploied) 387.034
CNS0095601Golden flower (diploid) 1230.434
CNS0095602Golden flower (diploid) 2110.506
CNS0095603Golden flower (diploid) 3104.476
CNS0095604Slightly white alabastrum(tetraploid) 12.537
CNS0095605Slightly white alabastrum(tetraploid) 21.996
CNS0095606Slightly white alabastrum(tetraploid) 34.475
CNS0095607Whole white alabastrum(tetraploid) 13.582
CNS0095608Whole white alabastrum(tetraploid) 20.826
CNS0095609Whole white alabastrum(tetraploid) 30.894
CNS0095610Silvery flower (tetraploid) 140.306
CNS0095611Silvery flower (tetraploid) 214.911
CNS0095612Silvery flower (tetraploid) 360.877
CNS0095613Golden flower (tetraploid) 156.244
CNS0095614Golden flower (tetraploid) 248.283
CNS0095615Golden flower (tetraploid) 345.483
CRA001975CRR073297Stem 145.643
CRR073298Stem 268.513
CRR073299Stem 398.390
CRR073300Leaf 1100.245
CRR073301Leaf 2156.116
CRR073302Leaf 395.627
CRR073303Juvenile bud 1106.683
CRR073304Juvenile bud 2104.387
CRR073305Juvenile bud 3225.985
CRR073306Third green 178.666
CRR073307Third green 281.728
CRR073308Third green 378.464
CRR073309Second white 147.086
CRR073310Second white 243.330
CRR073311Second white 339.636
CRR073312Silver flowering 1111.926
CRR073313Silver flowering 2133.682
CRR073314Silver flowering 398.324
CRR073315Gold flowering 158.451
CRR073316Gold flowering 266.144
CRR073317Gold flowering 394.461
CRR073318Tawny withering 175.533
CRR073319Tawny withering 2152.011
CRR073320Tawny withering 3117.725