Detail information of GWHGAAZE012244


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775925.10PREDICTED: pectinesterase-like [Nicotiana sylvestris]
Swissprottr|Q8GX86|PME21_ARATH1E-178Pectinesterase 21
trEMBLtr|K4AWN9|K4AWN9_SOLLC0Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT3G05610.12E-148Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8237608282383820+
GWHAAZE00000003mRNA8237608282383820+
GWHAAZE00000003exon8237608282376097+
GWHAAZE00000003exon8238222582383508+
GWHAAZE00000003exon8238359782383820+
GWHAAZE00000003CDS8237608282376097+
GWHAAZE00000003CDS8238222582383508+
GWHAAZE00000003CDS8238359782383820+
Transcript Sequence

Network for GWHGAAZE012244

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04043.16PMEI321781.80E-25
PF01095.20Pectinesterase2234291.80E-90
PF01095.20Pectinesterase4324907.10E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0004857molecular_functionenzyme inhibitor activity
GO:0030599molecular_functionpectinesterase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE012244.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3050010001500200025003000350040004500500055006000Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.584
SRR3591706second leaf0.309
SRR3591707mature leaf0.731
SRR3591708Shoot apex2.618
SRR3591709Stem16.039
SRR3591710White floral bud2339.059
SRR3591711White flower115.411
SRR3591712Green floral bud2500.073
SRR3591713Yellow flower73.656
SRP173429 SRR8316895Juvenile bud stage 451.672
SRR8316896Juvenile bud stage 1160.826
SRR8316897Juvenile bud stage 472.944
SRR8316894Third green stage 289.855
SRR8316900Third green stage 1088.182
SRR8316901Third green stage 1323.105
SRR8316898Complete white stage 1.107
SRR8316899Complete white stage 9.805
SRR8316903Complete white stage 2.093
SRR8316902Silver flowering stage18.649
SRR8316904Silver flowering stage33.755
SRR8316905Silver flowering stage11.117
SRR8316906Gold flowering stage 5.498
SRR8316907Gold flowering stage 1.880
SRR8316908Gold flowering stage 2.034
SRP132670SRR6706286Control739.091
SRR6706287Light intensity 50%672.495
SRR6706288Light intensity 20%566.565
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11753.466
CNS0095593Slightly white alabastrum(diploid) 21346.585
CNS0095594Slightly white alabastrum(diploid) 32188.172
CNS0095595Whole white alabastrum(diploid) 22732.417
CNS0095596Whole white alabastrum(diploid) 33369.104
CNS0095597Whole white alabastrum(diploid) 43524.402
CNS0095598Silvery flower (diploied) 178.268
CNS0095599Silvery flower (diploied) 2300.408
CNS0095600Silvery flower (diploied) 364.037
CNS0095601Golden flower (diploid) 193.597
CNS0095602Golden flower (diploid) 248.003
CNS0095603Golden flower (diploid) 347.348
CNS0095604Slightly white alabastrum(tetraploid) 13305.940
CNS0095605Slightly white alabastrum(tetraploid) 24116.353
CNS0095606Slightly white alabastrum(tetraploid) 33.414
CNS0095607Whole white alabastrum(tetraploid) 15583.092
CNS0095608Whole white alabastrum(tetraploid) 25541.517
CNS0095609Whole white alabastrum(tetraploid) 32794.467
CNS0095610Silvery flower (tetraploid) 154.101
CNS0095611Silvery flower (tetraploid) 2259.631
CNS0095612Silvery flower (tetraploid) 3717.080
CNS0095613Golden flower (tetraploid) 1105.546
CNS0095614Golden flower (tetraploid) 219.059
CNS0095615Golden flower (tetraploid) 3316.631
CRA001975CRR073297Stem 1820.844
CRR073298Stem 2737.948
CRR073299Stem 3518.997
CRR073300Leaf 11757.312
CRR073301Leaf 21315.560
CRR073302Leaf 3786.124
CRR073303Juvenile bud 11299.890
CRR073304Juvenile bud 2844.514
CRR073305Juvenile bud 3116.427
CRR073306Third green 1551.224
CRR073307Third green 2704.208
CRR073308Third green 3559.598
CRR073309Second white 123.369
CRR073310Second white 2132.250
CRR073311Second white 3140.367
CRR073312Silver flowering 1671.573
CRR073313Silver flowering 2659.977
CRR073314Silver flowering 3408.976
CRR073315Gold flowering 1559.257
CRR073316Gold flowering 2179.856
CRR073317Gold flowering 3101.787
CRR073318Tawny withering 1610.335
CRR073319Tawny withering 2548.777
CRR073320Tawny withering 3540.197