Detail information of GWHGAAZE012245


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775925.19.5323E-145PREDICTED: pectinesterase-like [Nicotiana sylvestris]
Swissprottr|Q43043|PME_PETIN7E-124Pectinesterase (Precursor)
trEMBLtr|A0A068TS15|A0A068TS15_COFCA7E-143Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT5G27870.12E-102Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8239933882400261-
GWHAAZE00000003mRNA8239933882400261-
GWHAAZE00000003exon8239933882400261-
GWHAAZE00000003CDS8239933882400261-
Transcript Sequence

Network for GWHGAAZE012245

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01095.20Pectinesterase172904.20E-121
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0030599molecular_functionpectinesterase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.698
SRR3591706second leaf0.438
SRR3591707mature leaf0.376
SRR3591708Shoot apex2.322
SRR3591709Stem13.071
SRR3591710White floral bud1913.315
SRR3591711White flower94.360
SRR3591712Green floral bud2114.539
SRR3591713Yellow flower63.773
SRP173429 SRR8316895Juvenile bud stage 333.645
SRR8316896Juvenile bud stage 897.212
SRR8316897Juvenile bud stage 384.449
SRR8316894Third green stage 215.681
SRR8316900Third green stage 830.901
SRR8316901Third green stage 1017.316
SRR8316898Complete white stage 0.884
SRR8316899Complete white stage 8.156
SRR8316903Complete white stage 1.191
SRR8316902Silver flowering stage14.167
SRR8316904Silver flowering stage23.122
SRR8316905Silver flowering stage8.438
SRR8316906Gold flowering stage 4.126
SRR8316907Gold flowering stage 1.194
SRR8316908Gold flowering stage 2.814
SRP132670SRR6706286Control495.559
SRR6706287Light intensity 50%475.710
SRR6706288Light intensity 20%404.321
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11545.662
CNS0095593Slightly white alabastrum(diploid) 21145.282
CNS0095594Slightly white alabastrum(diploid) 32116.257
CNS0095595Whole white alabastrum(diploid) 22197.143
CNS0095596Whole white alabastrum(diploid) 32773.792
CNS0095597Whole white alabastrum(diploid) 42880.872
CNS0095598Silvery flower (diploied) 168.771
CNS0095599Silvery flower (diploied) 2238.791
CNS0095600Silvery flower (diploied) 344.281
CNS0095601Golden flower (diploid) 178.578
CNS0095602Golden flower (diploid) 237.271
CNS0095603Golden flower (diploid) 337.242
CNS0095604Slightly white alabastrum(tetraploid) 12531.704
CNS0095605Slightly white alabastrum(tetraploid) 23248.871
CNS0095606Slightly white alabastrum(tetraploid) 32.628
CNS0095607Whole white alabastrum(tetraploid) 14585.788
CNS0095608Whole white alabastrum(tetraploid) 24446.484
CNS0095609Whole white alabastrum(tetraploid) 32203.271
CNS0095610Silvery flower (tetraploid) 143.927
CNS0095611Silvery flower (tetraploid) 2182.734
CNS0095612Silvery flower (tetraploid) 3504.228
CNS0095613Golden flower (tetraploid) 1100.324
CNS0095614Golden flower (tetraploid) 217.769
CNS0095615Golden flower (tetraploid) 3214.997
CRA001975CRR073297Stem 1545.940
CRR073298Stem 2511.499
CRR073299Stem 3361.333
CRR073300Leaf 11192.141
CRR073301Leaf 2872.856
CRR073302Leaf 3480.741
CRR073303Juvenile bud 1796.930
CRR073304Juvenile bud 2520.163
CRR073305Juvenile bud 380.053
CRR073306Third green 1359.995
CRR073307Third green 2463.682
CRR073308Third green 3388.635
CRR073309Second white 116.852
CRR073310Second white 286.795
CRR073311Second white 382.314
CRR073312Silver flowering 1413.873
CRR073313Silver flowering 2399.942
CRR073314Silver flowering 3251.852
CRR073315Gold flowering 1373.030
CRR073316Gold flowering 2102.022
CRR073317Gold flowering 363.579
CRR073318Tawny withering 1396.398
CRR073319Tawny withering 2367.932
CRR073320Tawny withering 3347.073