Gene detail

Detail information of GWHGAAZE012246

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271530.1	PREDICTED: sucrose synthase 2 [Vitis vinifera]
Swissprot	tr\|Q00917\|SUS2_ARATH	Sucrose synthase 2
trEMBL	tr\|D7SYA8\|D7SYA8_VITVI	Sucrose synthase {ECO:0000256\|RuleBase:RU280817}
TAIR10	AT5G49190.1	sucrose synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82408654	82416038	-
GWHAAZE00000003	mRNA	82408654	82416038	-
GWHAAZE00000003	exon	82408654	82408813	-
GWHAAZE00000003	exon	82408900	82409144	-
GWHAAZE00000003	exon	82409446	82409767	-
GWHAAZE00000003	exon	82410120	82410344	-
GWHAAZE00000003	exon	82410565	82410731	-
GWHAAZE00000003	exon	82410857	82410973	-
GWHAAZE00000003	exon	82411125	82411298	-
GWHAAZE00000003	exon	82411447	82411542	-
GWHAAZE00000003	exon	82412171	82412387	-
GWHAAZE00000003	exon	82412513	82412631	-
GWHAAZE00000003	exon	82413292	82413475	-
GWHAAZE00000003	exon	82413570	82413721	-
GWHAAZE00000003	exon	82415663	82415795	-
GWHAAZE00000003	exon	82415941	82416038	-
GWHAAZE00000003	CDS	82415941	82416038	-
GWHAAZE00000003	CDS	82415663	82415795	-
GWHAAZE00000003	CDS	82413570	82413721	-
GWHAAZE00000003	CDS	82413292	82413475	-
GWHAAZE00000003	CDS	82412513	82412631	-
GWHAAZE00000003	CDS	82412171	82412387	-
GWHAAZE00000003	CDS	82411447	82411542	-
GWHAAZE00000003	CDS	82411125	82411298	-
GWHAAZE00000003	CDS	82410857	82410973	-
GWHAAZE00000003	CDS	82410565	82410731	-
GWHAAZE00000003	CDS	82410120	82410344	-
GWHAAZE00000003	CDS	82409446	82409767	-
GWHAAZE00000003	CDS	82408900	82409144	-
GWHAAZE00000003	CDS	82408654	82408813	-

Transcript Sequence
>GWHTAAZE012260 ATGCCTCATCGTCTAATTAGTGGACCGCAAAGCATGAGAGATAGGGTTCAAGAAACCCTATCTGCTCACCGTAACGAACTTGTTTCCCTCTTCTCCAGATATATTGCTAAGGGAAAGGGGATTTTACAGTCTCATCACTTGACTGATGAACTGGACGGTGTAGATGGTGAAGATGAGGGAATGCAGAAGCTCAAGGACGGTCCCTTTTCCCAAATTTGGAGATGTGCTCAGGAAGCCATCGTTCTGCCACCATTCGTAGCCATAGCAATTCGTCCAAGACCTGGTGTTTGGGAATACATTCGTGTAAATGTCTATGAACTTAGCGTTGACCAACTCAGTGTTTCCGAATATCTTTTCTTCAAAGAAGAACTTGTTGATGGCCAGTACAATGAACTGGAGCTTGATTTTGAGCCATTCAATGCAACATTTCCTAGACCGACACGGTCATCATCAATCGGCAATGGAGTTCAGTTCCTCAATCGTCATCTATCATCAATTATGTTCCGTAACAAGGATAGCTTGGCTCCTTTGCTTGATTTTCTCCGAACGCACAAACATGATGGCCATGCACTGATGCTAAATGATCGTATACAAACAATATCCGGACTTCAATTTGCTTTAGCCAGATCGGAGGAATATCTCTCAAAGCTTCCATCCGATACACCATATTCTGATTTTGAATACGTGCTGCAAGGAATGGGCTTTGAGAAAGGTTGGGGTGACACAGCACAACGAGCATCAGAGACCGTGCACTTGCTTTTGGATCTCCTTCAGGCCCCGGATCCTTCTACTTTGGAGAAATTTCTTGGAAGGATTCCTATGGTTTTTAATGTTGTCATTGTGTCTCCTCACGGATACTTTGGCCAAGCAAATGTGTTAGGCTTACCCGACACTGGTGGACAGGTTGTCTATATACTTGACCAAGTGCGTGCTTTAGAGAATGAGATGCTTCTTCAAATACAAAAGCAAGGACTCGATGCTATCCCCAAAATTCTTATTGTGACTCGACTTATACCCGATGCAAAAGGCACAACATGCAATCAGAGGCTCGAAAGAATCAGTGGAACAGAGCATACACACATTCTGAGGGTGCCTTTTAGAACTGAGAAAGGCATTCTTCGCAAATGGATTTCAAGGTTTGATATTTGGCCATATCTTGAGAACTTTGCAGAGGATGTGTCAAACGAGATTGCTGCTGAGTTGCAAGGTGTGCCAGACCTAATAATTGGAAACTACAGTGATGGAAATCTTGTTGCTTCATTGTTATCTAATAAACTTGGAGTCACACAGTGTAACATTGCACATGCGCTGGAGAAAACAAAATATCCGAACTCTGATTTATACTGGAGAAAACATGAAGAAAAGTACCATTTCTCAAGCCAATTTACTGCTGATCTCATTGCAATGAATAATGCAGATTTCATTATCACCAGCACCTACCAAGAGATTGCAGGAAGCAAGAATCATGTTGGGCAGTACGAGAGCCACATAGCTTTCACTCTTCCAGGACACTACAGAGTTGTTCACGGCATAGATGTCTTCGATCCCAAATTCAATATCGTCTCTCCAGGGGCAGATATGAGCATGTATTTTTCATACTCAGAGAAGCAAATGAGACTTACGGCCCTACATGGTTCGATTGAAGAACTCTTGTATGATCCCGAGCAGAATGATGAACACATTGGAATGTTGAGCGACCAATCAAAGCCTATCATCTTTTCCATGGCGAGGCTCGACAGGGTGAAAAACCTAACCGGGTTGGTCGAGTGTTATGGTAAAAATTCAAAGCTGAGAGAGTTGGCTAATCTTGTTGTGGTTGGTGGTTACATCGATGCAAGTAAATCTAGGGATAGGGAAGAAATTTCGGAGATTGAGAAGATGCACAGCCTCATAAAAGAATACAACTTGCATGGTAAATTCCGATGGATAACGGCTCAAATGAACCGTGCTCGCAATGGTGAACTTTATCGCTATATAGCAGATACAAGAGGCATTTTTGTTCAGCCCGCTTTCTATGAAGCCTTTGGGCTTACAGTTGTTGAGGCCATGACTTGTGGGCTTCCTACATTTGCCACCTGTCATGGCGGCCCGGCTGAGATAATCGAGCACAGTGTTTCGGGATTCCACATCGACCCTTATCACCCTGATCAAGTTTCTACCCTTTTGGTTGAATTCTTTGAACTATCACAAAAGGAACCAAGCTATTGGAACAAAATCTGTGATGGAGGACTTAAACGTATCCATGAAAGGTATACGTGGAAGATATACTCTGAGAGGCTTCTTGCATTATCTGGGGTTTATGGGTTTTGGAAGTATGTGTCAAAGCTTGACAGGCGTGAGACAAGACGATACCTTGAAATGTTCTACATTCTCAAGTATAAAGATCTGGTAGGTACTCTAATAAAATGA

Network for GWHGAAZE012246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00862.20	Sucrose_synth	10	552	2.90E-281
PF00534.21	Glycos_transf_1	564	735	1.10E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00695	E2.4.1.13	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005985	biological_process	sucrose metabolic process
GO:0016157	molecular_function	sucrose synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.653
	SRR3591706	second leaf	0.165
	SRR3591707	mature leaf	0.912
	SRR3591708	Shoot apex	0.298
	SRR3591709	Stem	0.684
	SRR3591710	White floral bud	0.406
	SRR3591711	White flower	0.219
	SRR3591712	Green floral bud	0.686
	SRR3591713	Yellow flower	0.408
SRP173429	SRR8316895	Juvenile bud stage	0.561
	SRR8316896	Juvenile bud stage	0.217
	SRR8316897	Juvenile bud stage	0.193
	SRR8316894	Third green stage	0.116
	SRR8316900	Third green stage	0.283
	SRR8316901	Third green stage	0.282
	SRR8316898	Complete white stage	0.185
	SRR8316899	Complete white stage	0.634
	SRR8316903	Complete white stage	0.236
	SRR8316902	Silver flowering stage	0.015
	SRR8316904	Silver flowering stage	0.292
	SRR8316905	Silver flowering stage	0.037
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.058
	SRR8316908	Gold flowering stage	0.038
SRP132670	SRR6706286	Control	0.163
	SRR6706287	Light intensity 50%	0.356
	SRR6706288	Light intensity 20%	0.407
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.202
	CNS0095593	Slightly white alabastrum(diploid) 2	0.108
	CNS0095594	Slightly white alabastrum(diploid) 3	0.167
	CNS0095595	Whole white alabastrum(diploid) 2	0.358
	CNS0095596	Whole white alabastrum(diploid) 3	0.474
	CNS0095597	Whole white alabastrum(diploid) 4	0.231
	CNS0095598	Silvery flower (diploied) 1	0.008
	CNS0095599	Silvery flower (diploied) 2	0.238
	CNS0095600	Silvery flower (diploied) 3	0.041
	CNS0095601	Golden flower (diploid) 1	0.128
	CNS0095602	Golden flower (diploid) 2	0.076
	CNS0095603	Golden flower (diploid) 3	0.066
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.167
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.148
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.114
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.049
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.048
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.073
	CNS0095612	Silvery flower (tetraploid) 3	0.042
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.385
	CRR073298	Stem 2	0.253
	CRR073299	Stem 3	0.044
	CRR073300	Leaf 1	0.397
	CRR073301	Leaf 2	0.393
	CRR073302	Leaf 3	0.185
	CRR073303	Juvenile bud 1	0.362
	CRR073304	Juvenile bud 2	0.388
	CRR073305	Juvenile bud 3	0.102
	CRR073306	Third green 1	0.088
	CRR073307	Third green 2	0.191
	CRR073308	Third green 3	0.174
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.703
	CRR073316	Gold flowering 2	0.926
	CRR073317	Gold flowering 3	0.120
	CRR073318	Tawny withering 1	0.328
	CRR073319	Tawny withering 2	0.106
	CRR073320	Tawny withering 3	0.439